View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524-Insertion-11 (Length: 376)
Name: NF1524-Insertion-11
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524-Insertion-11 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 92 - 376
Target Start/End: Complemental strand, 11192135 - 11191851
Alignment:
| Q |
92 |
tttctcaccaatatctaactaagttttggatatttgtaactcatatatttgatatctatgtttatgaaagggttgtgatgcatcactcttgttgaatgac |
191 |
Q |
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| T |
11192135 |
tttctcaccaacatctaactaagttttggatatttgtaactcatatatttgatatctatgtttatgaaagggttgtgatgcatcactcttgttgaatgac |
11192036 |
T |
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| Q |
192 |
tctgatactatcttgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgtgaatcaaatcaaagccgcaatcgaacttgctt |
291 |
Q |
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| T |
11192035 |
tctgatactatcgtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgtgaatcaaatcaaagccgcaatcgaacttgctt |
11191936 |
T |
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| Q |
292 |
gtcctagtgttgtgtcttgtgcggatattcttgcacttggtgctaatgtttcctccgttctggtacgtttcacatcctctatata |
376 |
Q |
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| T |
11191935 |
gtcctagtgttgtgtcttgtgcagatattcttgcacttggtgctaatgtttcctccgttctggtacgtttcacatcctctatata |
11191851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 122 - 356
Target Start/End: Original strand, 11171134 - 11171368
Alignment:
| Q |
122 |
tatttgtaactcatatatttgatatctatgtttatgaaagggttgtgatgcatcactcttgttgaatgactctgatactatcttgagtgagcaaggagct |
221 |
Q |
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| T |
11171134 |
tatttgtagctcatatattttatatctatgtttatgaaagggttgtgatgcatcaatcttgttgaataccacttctacgatcacaagtgagcaaacagct |
11171233 |
T |
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| Q |
222 |
ttgccaaatagaaactcaataagaggtttggatattgtgaatcaaatcaaagccgcaatcgaacttgcttgtcctagtgttgtgtcttgtgcggatattc |
321 |
Q |
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| T |
11171234 |
tttggaaataacaactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattc |
11171333 |
T |
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| Q |
322 |
ttgcacttggtgctaatgtttcctccgttctggta |
356 |
Q |
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| T |
11171334 |
ttgctcttgctgctgaaatttcctctgttctggta |
11171368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 11184898 - 11184823
Alignment:
| Q |
290 |
ttgtcctagtgttgtgtcttgtgcggatattcttgcacttggtgctaatgtttcctccgttctggtacgtttcaca |
365 |
Q |
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| T |
11184898 |
ttgtcctagtgttgtgtcttgtgctgatattcttgcacttggtgctaacatttcctcagttctggtatgttccaca |
11184823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 11145247 - 11145359
Alignment:
| Q |
160 |
agggttgtgatgcatcactcttgttgaatgactctgatactatcttgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt |
259 |
Q |
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| T |
11145247 |
agggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgttgt |
11145346 |
T |
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| Q |
260 |
gaatcaaatcaaa |
272 |
Q |
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| T |
11145347 |
gaatcaaatcaaa |
11145359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 11136948 - 11137060
Alignment:
| Q |
160 |
agggttgtgatgcatcactcttgttgaatgactctgatactatcttgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt |
259 |
Q |
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| T |
11136948 |
agggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgt |
11137047 |
T |
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| Q |
260 |
gaatcaaatcaaa |
272 |
Q |
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| T |
11137048 |
gaatcaaatcaaa |
11137060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 11149226 - 11149293
Alignment:
| Q |
205 |
tgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgtgaatcaaatcaaa |
272 |
Q |
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| T |
11149226 |
tgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgttgtgaatcaaatcaaa |
11149293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 11192168 - 11192133
Alignment:
| Q |
8 |
gctacgacgtgattctatcaaactcactgtaaattt |
43 |
Q |
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| T |
11192168 |
gctacgacgtgattctatcaaactaactgtaaattt |
11192133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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