View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1524-Insertion-12 (Length: 375)

Name: NF1524-Insertion-12
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1524-Insertion-12
NF1524-Insertion-12
[»] chr5 (8 HSPs)
chr5 (11-351)||(38447508-38447836)
chr5 (18-69)||(26033204-26033255)
chr5 (316-355)||(38456612-38456651)
chr5 (158-191)||(38181145-38181178)
chr5 (158-191)||(38189953-38189986)
chr5 (158-191)||(38208369-38208402)
chr5 (158-191)||(38217178-38217211)
chr5 (158-191)||(38456505-38456538)
[»] chr1 (2 HSPs)
chr1 (149-262)||(38342950-38343063)
chr1 (149-262)||(38447143-38447256)
[»] chr3 (1 HSPs)
chr3 (158-228)||(6067706-6067776)
[»] chr4 (1 HSPs)
chr4 (26-107)||(53351281-53351365)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 38447508 - 38447836
Alignment:
Q  11 ataaaaagcgtggcttgtcacccttccctggcaacatggaactggatgatgagttgaatggtggttccagtggccaacaagttgaggattctcaagaaaa 110  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447508 ataaaaagtgtggcttgtcacccttccctgacaacatggaactggatgatgagttgaatggtggttccagtggccaacaagttgaggattctcaagaaaa 38447607  T
Q  111 taactttgatgtctcaaataagcagttttcaaagttggttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447608 taactttgatgtctcaaataagcagttttcaaagttggttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacc 38447707  T
Q  211 tcaagattgattgataggtgagtagattatgcattgctattctcttttatatatatctattagtgttgccaatattaataatagttttccgtnnnnnnnt 310  Q
    || ||||||||||||||||||||||||||||||||||            |||| ||||||||||||||||||||||||||||||||||| ||       |    
T  38447708 tcgagattgattgataggtgagtagattatgcattgc------------tatacatctattagtgttgccaatattaataatagttttctgtaaaaaaat 38447795  T
Q  311 tatacgttaaatttacaattactttcgtcaatttcaggggt 351  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38447796 tatacgttaaatttacaattactttcgtcaatttcaggggt 38447836  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 26033255 - 26033204
Alignment:
Q  18 gcgtggcttgtcacccttccctggcaacatggaactggatgatgagttgaat 69  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  26033255 gcgtggcttgtcacccttccctgacaacatggaactggatgatgagctgaat 26033204  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 38456612 - 38456651
Alignment:
Q  316 gttaaatttacaattactttcgtcaatttcaggggtagca 355  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  38456612 gttaaatttacagttactttcatcaatttcaggggtagca 38456651  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 38181145 - 38181178
Alignment:
Q  158 caaatatgttctacaataatgtgggaagtacttc 191  Q
    |||| |||||||||||||||||||||||||||||    
T  38181145 caaacatgttctacaataatgtgggaagtacttc 38181178  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 38189986 - 38189953
Alignment:
Q  158 caaatatgttctacaataatgtgggaagtacttc 191  Q
    |||| |||||||||||||||||||||||||||||    
T  38189986 caaacatgttctacaataatgtgggaagtacttc 38189953  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 38208369 - 38208402
Alignment:
Q  158 caaatatgttctacaataatgtgggaagtacttc 191  Q
    |||| |||||||||||||||||||||||||||||    
T  38208369 caaacatgttctacaataatgtgggaagtacttc 38208402  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 38217211 - 38217178
Alignment:
Q  158 caaatatgttctacaataatgtgggaagtacttc 191  Q
    |||| |||||||||||||||||||||||||||||    
T  38217211 caaacatgttctacaataatgtgggaagtacttc 38217178  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 38456505 - 38456538
Alignment:
Q  158 caaatatgttctacaataatgtgggaagtacttc 191  Q
    |||| |||||||||||||||||||||||||||||    
T  38456505 caaacatgttctacaataatgtgggaagtacttc 38456538  T

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Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 38342950 - 38343063
Alignment:
Q  149 ttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgataggtgagtagattatgcattgct 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||||||| |||     
T  38342950 ttgatgattcaaatatgttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgataggtgagttgattatgcaatgcc 38343049  T
Q  249 attctcttttatat 262  Q
    ||||||||||||||    
T  38343050 attctcttttatat 38343063  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 38447143 - 38447256
Alignment:
Q  149 ttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgataggtgagtagattatgcattgct 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||||||| |||     
T  38447143 ttgatgattcaaatatgttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgataggtgagttgattatgcaatgcc 38447242  T
Q  249 attctcttttatat 262  Q
    ||||||||||||||    
T  38447243 attctcttttatat 38447256  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 6067776 - 6067706
Alignment:
Q  158 caaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgatagg 228  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  6067776 caaacatgttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattgattgatagg 6067706  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 53351365 - 53351281
Alignment:
Q  26 tgtcacccttccctggcaacatggaactggatgatgagttgaat---ggtggttccagtggccaacaagttgaggattctcaaga 107  Q
    |||||||||| |||| ||| ||||||||| ||||||||||||||    ||||||| | | ||||||||||| ||||||| |||||    
T  53351365 tgtcaccctttcctgacaagatggaactgaatgatgagttgaataaaagtggttcaaatagccaacaagttaaggattcacaaga 53351281  T

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