View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524-Insertion-2 (Length: 1135)
Name: NF1524-Insertion-2
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 532 - 1060
Target Start/End: Original strand, 28835782 - 28836327
Alignment:
| Q |
532 |
aatcagatgaattacctgttgtggtagtcagagtgagtccgatctgaaaacaacagaattatgggaaactgttgatgacagcaacataacaaaagggaac |
631 |
Q |
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| T |
28835782 |
aatcagatgaattacctgttgtggtagtcagagtgagtccgatctgaaaacaacagaattatgggaaactgttgatgacagcaacatgacaaaagggaac |
28835881 |
T |
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| Q |
632 |
aacgatgatgatgatgttgcgtaaatctcaaagaa--tgttgtttgcttaaaatgttggcattgagatttggacaaaaagcgtggaagtggcagtgttgt |
729 |
Q |
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| T |
28835882 |
aacgatgatgatgatgttgcgtaaatctcaaagaaaatgttgtttgcttacaatgttggcattgagatttggacaaaaagcgtggaagtggcagtgttgt |
28835981 |
T |
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| Q |
730 |
tcttttaaccgccactctgttctgtgtctgtgttaccaaaacattctcacttctaaattctgatgtcacaagaca-------agagagagatgagttcgc |
822 |
Q |
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| T |
28835982 |
tcttttaaccgccactctgttctgtgtctgtgttaccaaaacattctcacttctaaattctgatgtcacaagacaaagagagagagagagatgggttcgc |
28836081 |
T |
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| Q |
823 |
aattcttaggacaaacaatt-----gtttaactcctaactcaagtgaccgtgatttgaacccaaccctcaacttgtgttgtatattttaacagttattcg |
917 |
Q |
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| T |
28836082 |
aattcttaggacaaacaattgtttagtttaactcctaactcaggtgaccgtgatttgaacccaaccctcagcttgtgttgtatattttaacagttattcg |
28836181 |
T |
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| Q |
918 |
ttggatccaaaaataatcctctatccgtctaaaaatattgataatctgattatagataaagattctaggaactaacggtggttcaagtg-tgcaccaaaa |
1016 |
Q |
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| T |
28836182 |
ttggatccaaaaataatcctctatttgtccaaaaatattgataatctgattatagataaagattctaggaactaacggtggttcaagtgttgcaccaaaa |
28836281 |
T |
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| Q |
1017 |
attctatcagtggaggggtctacatc--aacctcatagcgtcttta |
1060 |
Q |
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| T |
28836282 |
attctatcaagtgaggggtctacatcaaaacctcatagcgtcttta |
28836327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 28835283 - 28835440
Alignment:
| Q |
8 |
ctagctggaacaatcattaaccagacttaacttacctgcaagtcaaactccggttatcaaggtcccccttccccttgggcctcgggagcccaagggttaa |
107 |
Q |
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| T |
28835283 |
ctagctggaacaatcattaaccagacttaacttacctgcaagtcaaactccggttatcaaggtcccccttccccttgggcctcgggagcccaagggttaa |
28835382 |
T |
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| Q |
108 |
gacccatggaatcatccagatgagaattctgagctaccgagataaagcccaccttccc |
165 |
Q |
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| T |
28835383 |
gacccatggaatcatccaaatgagaattctgagctatcgagataaagccccccttccc |
28835440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 230 - 408
Target Start/End: Original strand, 28835498 - 28835677
Alignment:
| Q |
230 |
ttttagcatcaactacaactggagcaaatccaattcctcaatgaattgtaagctacaccacatcaaaaacattggacgagcac---tgtaacaacaatac |
326 |
Q |
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| T |
28835498 |
ttttagcatcaactacaattggagcaaatccaattcctcaatgaattgtaagctacaccacatcaaaat-attcaaagtccaaacatttgacga-aatac |
28835595 |
T |
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| Q |
327 |
taataagaacaaacccatttccaattctacaataaaattccaaaaccatcatgcacgataaatcaatctcatcacagagtac |
408 |
Q |
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| T |
28835596 |
taataaaaacaaatccatttccaattctacaataaaattccaaaaccatcatgcacgataaatcaatctcatcacagagtac |
28835677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 465 - 515
Target Start/End: Original strand, 28835736 - 28835786
Alignment:
| Q |
465 |
tgacaatgacccatgattcagaaagaccttacatctctgaaatatcaatca |
515 |
Q |
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| T |
28835736 |
tgacaatgacccatgattcagaaagaccttatacctctgaaatatcaatca |
28835786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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