View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1524-Insertion-4 (Length: 680)

Name: NF1524-Insertion-4
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1524-Insertion-4
NF1524-Insertion-4
[»] chr4 (12 HSPs)
chr4 (6-677)||(31734052-31734717)
chr4 (486-662)||(17732805-17732985)
chr4 (487-662)||(40289104-40289281)
chr4 (487-662)||(45612391-45612564)
chr4 (561-646)||(3419960-3420046)
chr4 (378-452)||(54305517-54305591)
chr4 (377-454)||(658646-658723)
chr4 (487-632)||(2641173-2641321)
chr4 (487-549)||(54305689-54305752)
chr4 (606-662)||(658430-658486)
chr4 (420-453)||(50310268-50310301)
chr4 (379-454)||(45612659-45612735)
[»] chr3 (16 HSPs)
chr3 (486-662)||(11410715-11410894)
chr3 (486-662)||(43921895-43922073)
chr3 (486-662)||(10516117-10516296)
chr3 (486-629)||(21408844-21408990)
chr3 (486-662)||(10657390-10657568)
chr3 (508-662)||(26565353-26565511)
chr3 (532-662)||(14218477-14218610)
chr3 (378-454)||(43922168-43922244)
chr3 (487-653)||(27063773-27063942)
chr3 (499-582)||(49860462-49860546)
chr3 (398-454)||(26565192-26565248)
chr3 (572-662)||(27109684-27109776)
chr3 (497-559)||(2227277-2227340)
chr3 (603-662)||(49861121-49861180)
chr3 (621-662)||(21408803-21408844)
chr3 (295-343)||(13218525-13218573)
[»] chr6 (12 HSPs)
chr6 (488-662)||(12843937-12844113)
chr6 (493-662)||(17540056-17540227)
chr6 (487-654)||(14494399-14494568)
chr6 (486-662)||(1255613-1255792)
chr6 (539-662)||(57082-57207)
chr6 (489-662)||(19542173-19542349)
chr6 (487-582)||(19294418-19294512)
chr6 (487-551)||(34708961-34709026)
chr6 (378-454)||(19294244-19294322)
chr6 (565-662)||(34709064-34709162)
chr6 (379-454)||(34011376-34011451)
chr6 (380-489)||(12843766-12843871)
[»] chr2 (16 HSPs)
chr2 (487-672)||(26576094-26576281)
chr2 (492-662)||(34409533-34409706)
chr2 (487-658)||(27004068-27004244)
chr2 (487-593)||(9929664-9929771)
chr2 (487-568)||(32200870-32200952)
chr2 (487-675)||(44649907-44650097)
chr2 (376-454)||(32201048-32201126)
chr2 (375-489)||(9929489-9929599)
chr2 (603-660)||(9929800-9929857)
chr2 (487-587)||(13037341-13037442)
chr2 (487-658)||(4748036-4748209)
chr2 (378-454)||(26575930-26576004)
chr2 (603-662)||(13039030-13039089)
chr2 (379-451)||(38783838-38783910)
chr2 (413-454)||(4748284-4748325)
chr2 (603-672)||(32200784-32200853)
[»] chr7 (12 HSPs)
chr7 (487-662)||(37338715-37338892)
chr7 (486-662)||(46532886-46533064)
chr7 (487-593)||(27616358-27616465)
chr7 (487-584)||(45215994-45216092)
chr7 (487-582)||(22290895-22290991)
chr7 (603-664)||(10678444-10678505)
chr7 (378-454)||(45216140-45216214)
chr7 (523-589)||(44572492-44572559)
chr7 (378-454)||(27616186-27616262)
chr7 (378-440)||(44572652-44572714)
chr7 (494-638)||(32716490-32716635)
chr7 (378-430)||(8799619-8799671)
[»] chr5 (6 HSPs)
chr5 (532-661)||(40837982-40838111)
chr5 (487-662)||(32676587-32676764)
chr5 (487-629)||(38989237-38989379)
chr5 (378-454)||(40837667-40837743)
chr5 (487-531)||(40837839-40837883)
chr5 (378-453)||(32676860-32676929)
[»] chr1 (10 HSPs)
chr1 (487-676)||(48632522-48632712)
chr1 (486-594)||(23431899-23432008)
chr1 (486-582)||(18476538-18476636)
chr1 (487-662)||(32740883-32741057)
chr1 (487-593)||(9149020-9149127)
chr1 (532-634)||(126331-126435)
chr1 (487-619)||(3954983-3955117)
chr1 (379-489)||(23431728-23431835)
chr1 (605-676)||(18488362-18488433)
chr1 (487-593)||(3387688-3387795)
[»] chr8 (11 HSPs)
chr8 (487-662)||(15850418-15850585)
chr8 (487-662)||(28421074-28421251)
chr8 (499-638)||(15131944-15132085)
chr8 (487-630)||(44502324-44502469)
chr8 (486-662)||(18603021-18603187)
chr8 (487-672)||(1226089-1226276)
chr8 (378-454)||(15850681-15850757)
chr8 (487-593)||(18393573-18393680)
chr8 (379-453)||(27401685-27401759)
chr8 (487-618)||(27401856-27401989)
chr8 (487-558)||(37855193-37855265)
[»] scaffold0325 (1 HSPs)
scaffold0325 (499-593)||(12923-13018)
[»] scaffold0019 (1 HSPs)
scaffold0019 (499-644)||(70040-70190)


Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 6 - 677
Target Start/End: Original strand, 31734052 - 31734717
Alignment:
Q  6 caaacagtacaatcattgtacaatatgtagatgattttcaatcaagtacaattaaagtacaatcaccaagtataatataagtgtgttaatttcaaattct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734052 caaacagtacaatcattgtacaatatgtagatgattttcaatcaagtacaattaaagtacaatcaccaagtataatataagtgtgttaatttcaaattct 31734151  T
Q  106 aatggatcaggccaaacatatgggaagtcttcttctagtgtggtgttgaagctaactatactagactagagtgacagaaggaagaagcttttgttataga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31734152 aatggatcaggccaaacatatgggaagtcttcttctagtgtggtgttgaagctaactatactagactagagtgacagaaggaagaaacttttgttataga 31734251  T
Q  206 atttttagcatagaaatgcttgcctcggactttatctctatggagattggaccaaaactaagtgatatcgtctagaaattaaaattacctgacttcgaga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  31734252 atttttagcatagaaatgcttgcctcggactttatctctatggagattggaccaaaactaagtgatatcgtctagaaa-----attacctgacttcgaga 31734346  T
Q  306 gtcatgatgatattactggcgaatgtcttgatcagaatgtggtttacttcagaaatgatatgtcgactgtatctatgaagcatggactccgacatggcca 405  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734347 gtcatgatgatattactggcaaatgtcttgatcagaatgtggtttacttcagaaatgatatgtcgactgtatctatgaagcatggactccgacatggcca 31734446  T
Q  406 cctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaattaatataggataccaacactactgcatatatgttatttcattagaaaaagt 505  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  31734447 cctgacaggataccgacacggacacttcgacaccactagtgtaaaaaattaatataggacaccaacactgctgcatatattttatttcattagaaaaagt 31734546  T
Q  506 tctaaaataagatatcgtagtatttgcctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtctattactccatgtga 605  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31734547 tctaaaacaagatatcgtagtattttcctttatttattcatctactatcaaaagagctaaaaatgttataatcaactataatgtctattaccccatgtga 31734646  T
Q  606 tcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaaggaaaaatgtttt 677  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  31734647 tcaacatttctcaaaacatatgtaactcttgtatctacggtatgtggaagcaagagaaa-gaaaaatgtttt 31734717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 486 - 662
Target Start/End: Original strand, 17732805 - 17732985
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttgcc--tttatttattcatctactgtcaaaagagctaaaaatgttataatcaacta 583  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| |  |||||||||||||||||| |||||| |||||||||||||||||||||||     
T  17732805 gttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaaatgttataatcaactg 17732904  T
Q  584 taatgtctatta-ctcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||||||| |||| |  | |||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||    
T  17732905 taatgtctattacctcctaattaatcaacatttctcaaaacacatgtaactcttgtatctacgatatgtggaagcaagaga 17732985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 40289281 - 40289104
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||| |||||| | ||||||||    ||||||| | ||    
T  40289281 ttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaaactaaaaataacttaatcaattgta 40289182  T
Q  586 atgtctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||  || || |  |||| ||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||||||    
T  40289181 atgtctacaacccctaattgattaacatttctcaaaacatatgtaaatcttgtatctatggtgtgtggaagcaagaga 40289104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 45612564 - 45612391
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||| ||||||||||| |||||| || |||||||     |||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  45612564 ttatgtcattagaaaatgttctacaacaagatat-----tatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactata 45612470  T
Q  586 atgtctattactccat-gtgatcaacatttttc-aaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||| |  || |  | |||||||||| || ||||||||||||||||||||| ||| ||| || ||||||||||||    
T  45612469 atgtctataaacccttattaatcaacatttctcaaaaacatatgtaactcttgtatctatggtgtgcggaagcaagaga 45612391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 561 - 646
Target Start/End: Original strand, 3419960 - 3420046
Alignment:
Q  561 gctaaaaatgttataatcaactataatgtctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggt 646  Q
    |||||||||  |||||||||||||||| ||||| || || |  |||||||||||| ||||||||||||||||||||||| |||||||    
T  3419960 gctaaaaattatataatcaactataatatctataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatctacggt 3420046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 452
Target Start/End: Original strand, 54305517 - 54305591
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaa 452  Q
    |||||||||||||||||| ||| || |||||||||  |||| ||||||||||| |||||| ||||| ||||||||    
T  54305517 ctatgaagcatggactccaacacggacacctgacacaacactgacacggacacgtcgacatcgctaatgtaaaaa 54305591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 454
Target Start/End: Complemental strand, 658723 - 658646
Alignment:
Q  377 tctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    ||||||||||| |||||||||||||| |||| |||| ||||| |||||||| || || |||| |||| ||||||||||    
T  658723 tctatgaagcacggactccgacatggacacccgacacgacactgacacggatacgtcaacactgctaatgtaaaaaat 658646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 632
Target Start/End: Original strand, 2641173 - 2641321
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||  |||||||||||||| || |||   | ||||||| |||||||||||| ||||||| | |||| ||  |||||  || ||||||||| ||    
T  2641173 ttatttcattgaaaaaagttctaaaacaaaatactatggtatttgacctttatttatttatctactataaaaaaagtcaaaaacattgtaatcaacttta 2641272  T
Q  586 atgtctattactccatg--tgatcaacatttttcaaaacatatgtaact 632  Q
    || ||||| ||||||||  |||||||||||| |||| ||||||| ||||    
T  2641273 atttctataactccatgattgatcaacatttctcaacacatatgaaact 2641321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 54305689 - 54305752
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatcta 549  Q
    |||||| ||||||||||||||||  | |||||||| ||||||||| ||||||||||||||||||    
T  54305689 ttatttaattagaaaaagttctacgacaagatatcatagtatttgacctttatttattcatcta 54305752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 662
Target Start/End: Complemental strand, 658486 - 658430
Alignment:
Q  606 tcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||||||||  |||||||||||||||||  ||||||| ||||||| |||||||    
T  658486 tcaacatttttcagcacatatgtaactcttgtttctacggtgtgtggaaccaagaga 658430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Complemental strand, 50310301 - 50310268
Alignment:
Q  420 gacacggacacttcgacaccgctagtgtaaaaaa 453  Q
    ||||||||||||||||||| ||||||||||||||    
T  50310301 gacacggacacttcgacactgctagtgtaaaaaa 50310268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 45612735 - 45612659
Alignment:
Q  379 tatgaagcatggactccga-catggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    ||||||| ||| ||||||| || || ||||||||| ||||| || | |||||| |||||||||||| ||||||||||    
T  45612735 tatgaagtatgtactccgaacacggacacctgacacgacactgatatggacacgtcgacaccgctaatgtaaaaaat 45612659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 486 - 662
Target Start/End: Original strand, 11410715 - 11410894
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||||  ||||||| ||||||||||||| ||    
T  11410715 gttatttcattagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatctactatcaaaaaggctaaaactgttataatcaacaat 11410814  T
Q  585 aatgtctattactccatg--tgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    ||| |||||||| || |   |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  11410815 aatatctattaccccctaattgatcaacatttctcaaaacatatgtaactcttgtatctacggtatgtggaagtaagaga 11410894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 486 - 662
Target Start/End: Complemental strand, 43922073 - 43921895
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttgc-ctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||| | |||||| ||||||||||||||||||||| | |    
T  43922073 gttatttcattagaaaaagttctaaaacaagacatcgtagtatttgatctttatttattcatctaatatcaaaaaagctaaaaatgttataatcaattgt 43921974  T
Q  585 aatgtctattactcc--atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||| ||||  ||  || |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  43921973 aatgtcaattaaccctgat-tgatcaacatttctcaaaacatatgtaactcttgtatctactgtatgtggaagcaagaga 43921895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 486 - 662
Target Start/End: Complemental strand, 10516296 - 10516117
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||||||  | ||||||||||||||| | ||||    
T  10516296 gttatttcattagaaaaagttctaaaataagatatcgtagtatttgaccattatttattcaactcctatcaaaaaggttaaaaatgttataataagctat 10516197  T
Q  585 aatgtctattactcc--atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    ||||| |||||| ||  |  |||| ||||||||| ||||||||||||||||||||| ||||||||  |||||| ||||||    
T  10516196 aatgtatattaccccctaattgattaacattttttaaaacatatgtaactcttgtatctacggtacatggaagtaagaga 10516117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 486 - 629
Target Start/End: Complemental strand, 21408990 - 21408844
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | ||||  | |||||||||||||||||| | |    
T  21408990 gttatttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctactataaaaaaggttaaaaatgttataatcaattgt 21408891  T
Q  585 aatgtctattactcc--atgtgatcaacatttttcaaaacatatgta 629  Q
    ||||| | |||| ||  |  |||||||||||| ||||||||||||||    
T  21408890 aatgtttgttaccccctaattgatcaacatttctcaaaacatatgta 21408844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 486 - 662
Target Start/End: Complemental strand, 10657568 - 10657390
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    ||||||| ||||||||||||||||||| |||||||||||  ||||| |||||||||||||| || || |||||| || |||||||||||||||||  | |    
T  10657568 gttattttattagaaaaagttctaaaacaagatatcgtataatttgacctttatttattcaactcct-tcaaaaaagttaaaaatgttataatcatatgt 10657470  T
Q  585 aatgtctatta--ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    ||||| | |||  ||| |  |||||||||||||||||||||||||||| ||||||| ||||||||  |||||| ||||||    
T  10657469 aatgtattttagcctctaattgatcaacatttttcaaaacatatgtaaatcttgtatctacggtacatggaagtaagaga 10657390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 508 - 662
Target Start/End: Original strand, 26565353 - 26565511
Alignment:
Q  508 taaaataagatatcgtagtatttgc-ctttatttattcatctactgtcaaaagag-ctaaaaatgttataatcaactataatgtctattactccatg--t 603  Q
    ||||| ||||||||||||||||||  ||||||||  |||| ||| ||||||| || |||||||||||||||| |||| |||||||||||||||| |   |    
T  26565353 taaaacaagatatcgtagtatttgatctttattttctcatttaccgtcaaaaaaggctaaaaatgttataattaactgtaatgtctattactccctaaat 26565452  T
Q  604 gatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    ||||||||||| | |||||||||||||||||| || ||| | |||||||||||||||||    
T  26565453 gatcaacatttctaaaaacatatgtaactcttatatctaagatatgtggaagcaagaga 26565511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 532 - 662
Target Start/End: Original strand, 14218477 - 14218610
Alignment:
Q  532 cctttatttattcatctactgtcaaaagag-ctaaaaatgttataatcaactataatgtctattactccatg--tgatcaacatttttcaaaacatatgt 628  Q
    |||||||||||| ||||||| | |||| |  ||||||||||||||||||||| ||||||||||||| || |   |||||||||||| |||||| ||||||    
T  14218477 cctttatttatttatctactataaaaaaaaactaaaaatgttataatcaactgtaatgtctattaccccctaattgatcaacatttatcaaaatatatgt 14218576  T
Q  629 aactcttgtacctacggtatgtggaagcaagaga 662  Q
     ||||||||  |||||||||||||||||||||||    
T  14218577 gactcttgtgtctacggtatgtggaagcaagaga 14218610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 43922244 - 43922168
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    ||||||||||||||||||||||  |  |||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  43922244 ctatgaagcatggactccgacacagatacctgacacgacactgacacggacacttcgacaccgctagtgtaaaaaat 43922168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 487 - 653
Target Start/End: Original strand, 27063773 - 27063942
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||| ||| |||| ||||||||| |||||| | || ||| || |||||||||||||||||||||||| || ||||||||||||| |||| ||||  |    
T  27063773 ttatttctttaaaaaacgttctaaaacaagataccataatatatgacctttatttattcatctactgtcataaaagctaaaaatgttgtaattaacttaa 27063872  T
Q  586 atgtctattactcc--atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtgga 653  Q
    || ||||| |||||  |  |||||||||||| |||| | ||||||||||||| || ||||| | ||||||    
T  27063873 atttctataactcctaaattgatcaacatttctcaacatatatgtaactcttatatctacgttgtgtgga 27063942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 499 - 582
Target Start/End: Original strand, 49860462 - 49860546
Alignment:
Q  499 aaaaagttctaaaataagatatcgtagtatttgcc-tttatttattcatctactgtcaaaagagctaaaaatgttataatcaact 582  Q
    |||||||||||||| ||||||| || ||||||| | |||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  49860462 aaaaagttctaaaacaagatatagtggtatttgacatttatttatttatctactatcaaaagagctaaaaatcttataatcaact 49860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 26565192 - 26565248
Alignment:
Q  398 catggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  26565192 catggacacctgacacgacactgacacggacacttcgacaccgctaatgtaaaaaat 26565248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 662
Target Start/End: Complemental strand, 27109776 - 27109684
Alignment:
Q  572 tataatcaactataatgtctattactccatgt--gatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||||||||||||||||  || || | |  |||||| |  |||||||||||||||||||||||||  |||||| |||||||||||||||    
T  27109776 tataatcaactataatgtctacaaccccctatcagatcaaaaaatttcaaaacatatgtaactcttgtatttacggtgtgtggaagcaagaga 27109684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 559
Target Start/End: Complemental strand, 2227340 - 2227277
Alignment:
Q  497 agaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaag 559  Q
    ||||||||||||| || ||||| || ||||||||| |||||||||||||||||||| |||||||    
T  2227340 agaaaaagttctacaacaagatgtcatagtatttgacctttatttattcatctactatcaaaag 2227277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 603 - 662
Target Start/End: Original strand, 49861121 - 49861180
Alignment:
Q  603 tgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||||| | ||||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  49861121 tgatcaacatatctcaaaacttatgtaactcttgtatctacggtgtgtagaagcaagaga 49861180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 621 - 662
Target Start/End: Complemental strand, 21408844 - 21408803
Alignment:
Q  621 acatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  21408844 acatatgtaactcttgtatctaagttatgtggaagcaagaga 21408803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 13218525 - 13218573
Alignment:
Q  295 tgacttcgagagtcatgatgatattactggcgaatgtcttgatcagaat 343  Q
    ||||||||| |||||||||||||||||||  ||| ||||| ||||||||    
T  13218525 tgacttcgaaagtcatgatgatattactgaggaacgtctttatcagaat 13218573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 488 - 662
Target Start/End: Original strand, 12843937 - 12844113
Alignment:
Q  488 tatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataa 586  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  12843937 tatttcattagaacaagttctacaataagatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataa 12844036  T
Q  587 tgtctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    ||| ||| || || |  |||||||||||| ||||||||||||||||||||||| ||| |||  ||||||||||||||    
T  12844037 tgtgtataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgcgtggaagcaagaga 12844113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 493 - 662
Target Start/End: Original strand, 17540056 - 17540227
Alignment:
Q  493 cattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtct 591  Q
    ||||||||||||||||  ||||||||||| ||||||||| |||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||  | |    
T  17540056 cattagaaaaagttctgcaataagatatcatagtatttgacctttatttatttatctactatcaaaaaagctaaaaatgatataatcaactataactttt 17540155  T
Q  592 attactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    || || || |  |||||||||||| ||||||||||||||||||||||| ||| ||| || ||||||||||||    
T  17540156 ataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagaga 17540227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 487 - 654
Target Start/End: Complemental strand, 14494568 - 14494399
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||||||||||||||| || || ||||| ||||||||| ||||||||||||| |||| | |||||| || |||||||| |||||||||||||     
T  14494568 ttatttcattagaaaaagttctacaacaaaatatcatagtatttgacctttatttattcgtctattatcaaaaaagttaaaaatgatataatcaactatg 14494469  T
Q  586 atgtctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaa 654  Q
    |||||||| || || |  |||||||||||| ||||||||||||||| ||||||| ||| ||| |||||||    
T  14494468 atgtctataacccctaattgatcaacatttctcaaaacatatgtaattcttgtatctatggtgtgtggaa 14494399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 486 - 662
Target Start/End: Complemental strand, 1255792 - 1255613
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| | |||||||||  |||| || |||||| ||||||||||||||||||||||| |    
T  1255792 gttattttattagaaaaagttctaaaacaagatatcgtagtatttgacatttatttatgtatctgctatcaaaaaagctaaaaatgttataatcaactgt 1255693  T
Q  585 aatgtctattactcc--atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    ||||||||| || ||  |  |||||||||||  ||||||| |||||| |||||||| |||   | |||||||||||||||    
T  1255692 aatgtctataaccccctaattgatcaacattcctcaaaacctatgtagctcttgtatctattatttgtggaagcaagaga 1255613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 539 - 662
Target Start/End: Original strand, 57082 - 57207
Alignment:
Q  539 ttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtctattac--tccatgtgatcaacatttttcaaaacatatgtaactcttg 636  Q
    ||||||||||||| |||||| || |||||||||||||||||||| |||||||||| ||  || |  |||||||||||| || ||||||||||||||||||    
T  57082 ttattcatctactatcaaaaaaggtaaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctccaaacatatgtaactcttg 57181  T
Q  637 tacctacggtatgtggaagcaagaga 662  Q
    || |||||||||||||||||||||||    
T  57182 tatctacggtatgtggaagcaagaga 57207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 662
Target Start/End: Original strand, 19542173 - 19542349
Alignment:
Q  489 atttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataat 587  Q
    |||||||| |||||| |||||||| || ||||| ||||||||| |||||||||||||||||||| |||| |  ||||||| |||||||||||||| ||||    
T  19542173 atttcattggaaaaaattctaaaacaaaatatcttagtatttgtcctttatttattcatctactatcaagaatgctaaaattgttataatcaactttaat 19542272  T
Q  588 gtctattactc-catgtgatcaacatttttcaaaacatatgtaactcttgtacctacgg-tatgtggaagcaagaga 662  Q
     ||| | || |  |  || |||| |||| |||||||| ||||||||||||||  ||||| |||||||||||||||||    
T  19542273 atctctaacccttaattgttcaatatttctcaaaacaaatgtaactcttgtatgtacggttatgtggaagcaagaga 19542349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 582
Target Start/End: Original strand, 19294418 - 19294512
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagct-aaaaatgttataatcaact 582  Q
    |||||||||||||||||||||   || |||||||| ||||||||| |||||||||||||||||||| | |||| |||| ||||||| |||||||||||    
T  19294418 ttatttcattagaaaaagttc---aacaagatatcatagtatttgacctttatttattcatctactatgaaaaaagctaaaaaatgatataatcaact 19294512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 551
Target Start/End: Original strand, 34708961 - 34709026
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctact 551  Q
    ||||||||||||||||||||||  || |||||||| ||||||||| ||||||||||||||||||||    
T  34708961 ttatttcattagaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctact 34709026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 19294244 - 19294322
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctga--caggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    ||||||||||||||||| ||||||| |||||||  || ||||| |||||| |||| |||||||||||| ||||||||||    
T  19294244 ctatgaagcatggactctgacatggacacctgacgcacgacactgacacgaacacatcgacaccgctaatgtaaaaaat 19294322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 662
Target Start/End: Original strand, 34709064 - 34709162
Alignment:
Q  565 aaaatgttataatcaactataatgtctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||| |||||||||||||||||| ||| || || |  ||||||||||||||||||| |||| |||||||| || ||| ||  |||| ||||||||||    
T  34709064 aaaatgatataatcaactataatgtatataacccctaattgatcaacatttttcaaaatatatataactcttatatctatggcgtgtgaaagcaagaga 34709162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 34011451 - 34011376
Alignment:
Q  379 tatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    |||||||||||||||  |||| || ||| |||||  |||| ||||||||||| ||||| |||||| ||||||||||    
T  34011451 tatgaagcatggactttgacacggacacgtgacacaacactgacacggacacgtcgacgccgctaatgtaaaaaat 34011376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 380 - 489
Target Start/End: Original strand, 12843766 - 12843871
Alignment:
Q  380 atgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaattaatataggataccaacactactgc 479  Q
    |||||||||||||||||||| || ||| ||||| ||||| |||||  |||| ||||||| |||| | ||| |    ||||||||| || |||||| || |    
T  12843766 atgaagcatggactccgacacggacacttgacacgacactgacacaaacacgtcgacactgctaatataaca----aatataggacactaacactgctac 12843861  T
Q  480 atatatgtta 489  Q
    ||||||||||    
T  12843862 atatatgtta 12843871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 487 - 672
Target Start/End: Original strand, 26576094 - 26576281
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||| |||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||| |||||  ||||||||| | ||||||||||||||    
T  26576094 ttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaataagctaaaaacgatataatcaactata 26576193  T
Q  586 atgtctatta-ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaaggaaaaat 672  Q
    |||||||| | | | |   ||||||||||| ||||||||||||||||||||||| ||| ||| || |||||||||||| || ||||||    
T  26576194 atgtctataaccactaatcgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagagaaaaaat 26576281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 492 - 662
Target Start/End: Complemental strand, 34409706 - 34409533
Alignment:
Q  492 tcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtca-aaagagctaaaaatgttataatcaactataatgt 589  Q
    |||||||||||||||||| || |||||||  ||||||||| |||||||||||| |||||| |||| ||| ||||||||||| ||||||||||||||||||    
T  34409706 tcattagaaaaagttctacaacaagatattatagtatttgacctttatttatttatctaccgtcagaaaaagctaaaaatgatataatcaactataatgt 34409607  T
Q  590 ctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||| || || |  |||||||||||| ||||||||||||||||||||||| ||| ||| || |||| |||||||    
T  34409606 ctataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaatcaagaga 34409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 487 - 658
Target Start/End: Original strand, 27004068 - 27004244
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagag---ctaaaaatgttataatcaact 582  Q
    ||||||||||| ||||||||||  || |||||||| ||||||||| |||||||||||||||||||||| |||| |    ||||||||| |||||||||||    
T  27004068 ttatttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctactgtaaaaaaaaaaactaaaaatgatataatcaact 27004167  T
Q  583 ataatgtctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaa 658  Q
    |||||||  || || || |  ||||||||||||||||||||||||  |||||||||| ||| || ||||| ||||||    
T  27004168 ataatgtacataacccctaattgatcaacatttttcaaaacatatacaactcttgtatctatggcatgtgaaagcaa 27004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 487 - 593
Target Start/End: Original strand, 9929664 - 9929771
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||| ||||||  ||| |||||| ||| ||||||| ||    
T  9929664 ttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaatgctcaaaatgatatgatcaactgta 9929763  T
Q  586 atgtctat 593  Q
    ||||||||    
T  9929764 atgtctat 9929771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 487 - 568
Target Start/End: Complemental strand, 32200952 - 32200870
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaa 568  Q
    |||| |||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||    
T  32200952 ttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaa 32200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 487 - 675
Target Start/End: Complemental strand, 44650097 - 44649907
Alignment:
Q  487 ttatttcatt-agaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    |||||||||| | ||||| || ||||| |||||| | ||| ||||| |||||||||||||||||||| |||||| || |||||||||| ||||||||| |    
T  44650097 ttatttcattgaaaaaaaattataaaacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaacttt 44649998  T
Q  585 aatgtctatta--ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaaggaaaaatgtt 675  Q
    ||| ||||| |  | | |  ||||||||||||||||| |||||| |||||||  || ||||| | ||||||| ||||||| || |||||||||    
T  44649997 aatttctataagcccctaattgatcaacatttttcaacacatatataactct--tatctacgttgtgtggaaccaagagagagaaaaaatgtt 44649907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 376 - 454
Target Start/End: Complemental strand, 32201126 - 32201048
Alignment:
Q  376 atctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    |||||||||||||||||||| ||| |  ||||||||| ||||| ||||||||||| |||||||||||| ||||||||||    
T  32201126 atctatgaagcatggactccaacacgaacacctgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaat 32201048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 375 - 489
Target Start/End: Original strand, 9929489 - 9929599
Alignment:
Q  375 tatctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaattaatataggataccaacact 474  Q
    ||||||||||||||||||| |||||    ||| ||||| ||||| ||||||||||| |||||||||||| |||||||    ||||||||| |||||||||    
T  9929489 tatctatgaagcatggactacgacacaaacacttgacacgacactgacacggacacgtcgacaccgctaatgtaaaa----aatataggacaccaacact 9929584  T
Q  475 actgcatatatgtta 489  Q
     || |||||||||||    
T  9929585 gctacatatatgtta 9929599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 603 - 660
Target Start/End: Original strand, 9929800 - 9929857
Alignment:
Q  603 tgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaaga 660  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  9929800 tgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgtggaagcaaga 9929857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 587
Target Start/End: Original strand, 13037341 - 13037442
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttgc-ctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||| ||||| |||||||||||| || |||||||| |||||||||  ||||||||||||||||||| |||||| |  |||||| | |||| |||||||||    
T  13037341 ttatgtcatttgaaaaagttctacaacaagatatcatagtatttgatctttatttattcatctactatcaaaaaaattaaaaacgatatagtcaactata 13037440  T
Q  586 at 587  Q
    ||    
T  13037441 at 13037442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 658
Target Start/End: Complemental strand, 4748209 - 4748036
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||||||||| ||||||||||||||| ||| ||   ||||||||| ||||||||||||||||| || |  ||  | ||||||||| | ||||||||| ||    
T  4748209 ttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatgctgtaatcaacttta 4748110  T
Q  586 atg--tctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaa 658  Q
    |||  ||||| || ||   ||||||||||  ||||| |||| |||||||||||| | ||||||| |||||||||||    
T  4748109 atgtctctataacccctcagtgatcaaca--tttcacaacacatgtaactcttggatctacggtgtgtggaagcaa 4748036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 26575930 - 26576004
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    |||||||||||||||||||||| || |||||||||  ||||   ||||||||| |||||||||||| ||||||||||    
T  26575930 ctatgaagcatggactccgacacggacacctgacacaacac--tcacggacacgtcgacaccgctaatgtaaaaaat 26576004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 603 - 662
Target Start/End: Original strand, 13039030 - 13039089
Alignment:
Q  603 tgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||||||| ||| ||||||||||||||||||| ||| ||| || ||||||||||||    
T  13039030 tgatcaacatttctcataacatatgtaactcttgtatctatggtgtgcggaagcaagaga 13039089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 451
Target Start/End: Complemental strand, 38783910 - 38783838
Alignment:
Q  379 tatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaa 451  Q
    ||||||||||| |||||||||| | ||||||||| || || ||||||||||| ||||||  |||| |||||||    
T  38783910 tatgaagcatgaactccgacatagacacctgacacgatactgacacggacacatcgacattgctaatgtaaaa 38783838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 4748325 - 4748284
Alignment:
Q  413 ggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    |||| ||||||||||||| |||||||||||| ||||||||||    
T  4748325 ggactccgacacggacacatcgacaccgctaatgtaaaaaat 4748284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 672
Target Start/End: Complemental strand, 32200853 - 32200784
Alignment:
Q  603 tgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaaggaaaaat 672  Q
    |||||| ||||| ||||||||||||||||||||||| | | ||  || |||||||||||| || ||||||    
T  32200853 tgatcagcatttctcaaaacatatgtaactcttgtatccatggcgtgcggaagcaagagagagaaaaaat 32200784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 37338892 - 37338715
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||||||||||||||| ||| | ||| |||||||| ||||||||| |||||||||||||||||||| |||||| || |||||||||||| ||||||| ||    
T  37338892 ttatttcattagaaaatgttatcaaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaacttta 37338793  T
Q  586 atgtctatta-ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||| ||  | | | |  |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  37338792 atgtttaaaatccctaattgatcaacatttctcaaagcatatgtaactcttgtatctacggtatgtggaagcaagaga 37338715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 486 - 662
Target Start/End: Original strand, 46532886 - 46533064
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||| || || |||||||| || ||||||||| ||||||||||||||||||||| | |    
T  46532886 gttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctgctgtcaaaaaagctaaaaatgttataatcaattgt 46532985  T
Q  585 aatgtctattactcc-atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    ||||| ||| || || |  |||||||||||  |||||| ||||||| |||||||| ||| | | |||| ||||||||||    
T  46532986 aatgtttataacccctaattgatcaacattcctcaaaatatatgtagctcttgtatctatgatttgtgtaagcaagaga 46533064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 487 - 593
Target Start/End: Original strand, 27616358 - 27616465
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttgccttt-atttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||||| ||||||| ||||||||||| |||||||| ||||||||| |||| |||||| |||||||| ||| || ||||||||||||||||||||||| ||    
T  27616358 ttatttaattagaacaagttctaaaacaagatatcatagtatttgacttttatttatacatctactatcagaaaagctaaaaatgttataatcaacttta 27616457  T
Q  586 atgtctat 593  Q
    ||||||||    
T  27616458 atgtctat 27616465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 487 - 584
Target Start/End: Complemental strand, 45216092 - 45215994
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    |||| |||||||||||||||||| |||||||| || || |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  45216092 ttatgtcattagaaaaagttctacaataagatgtcatattatttgacctttatttattcatctactgtcaaaaaagctaaaaatgatataatcatctat 45215994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 487 - 582
Target Start/End: Original strand, 22290895 - 22290991
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaact 582  Q
    ||||||||||| ||||||||||| || |||||||| | ||||||| |||||||||||| ||||||| |||||| ||||||||||  |||||||||||    
T  22290895 ttatttcattaaaaaaagttctacaacaagatatcattgtatttgacctttatttattaatctactatcaaaaaagctaaaaattatataatcaact 22290991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 10678444 - 10678505
Alignment:
Q  603 tgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaa 664  Q
    ||||||| |||| |||||||||| |||||||||||| |||||||||||||||||||||||||    
T  10678444 tgatcaatatttctcaaaacatacgtaactcttgtatctacggtatgtggaagcaagagaaa 10678505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 45216214 - 45216140
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    |||||||||||||||||  ||| || ||||||||| ||||| ||||||||||| |||||||||||| ||||||||||    
T  45216214 ctatgaagcatggactc--acacggacacctgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaat 45216140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 589
Target Start/End: Complemental strand, 44572559 - 44572492
Alignment:
Q  523 tagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgt 589  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||| | ||||||    
T  44572559 tagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaattgtaatgt 44572492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 27616186 - 27616262
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    |||||||||||||||||||||| |  ||||||||| || || ||||||||||  ||||||||| || ||||||||||    
T  27616186 ctatgaagcatggactccgacacgtacacctgacacgatactgacacggacatgtcgacaccgttaatgtaaaaaat 27616262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 44572714 - 44572652
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccg 440  Q
    |||||||||||||||||||||| || | ||||||| ||||| |||||||| || |||||||||    
T  44572714 ctatgaagcatggactccgacacggactcctgacacgacactgacacggatacgtcgacaccg 44572652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 638
Target Start/End: Complemental strand, 32716635 - 32716490
Alignment:
Q  494 attagaaaaagttctaaaataagatatcgtagtatttgc-ctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtcta 592  Q
    |||| |||||||||||||| ||||||   |||||||||  ||||||||||||||| ||| || ||| || |||||||| |  |||||| | |||||||||    
T  32716635 attaaaaaaagttctaaaacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaaaatggtgcaatcaattttaatgtcta 32716536  T
Q  593 ttactccatgtgatcaacatttttcaaaacatatgtaactcttgta 638  Q
    | |  ||   | ||||| |||| |||| | ||||||||||||||||    
T  32716535 taatccctcattatcaaaatttctcaatatatatgtaactcttgta 32716490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 8799619 - 8799671
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacac 430  Q
    |||||| ||||||||||||||| || ||||||||| |||||  ||||||||||    
T  8799619 ctatgacgcatggactccgacacggacacctgacacgacacttacacggacac 8799671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 532 - 661
Target Start/End: Original strand, 40837982 - 40838111
Alignment:
Q  532 cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtctattactcc-atgtgatcaacatttttcaaaacatatgtaa 630  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||| || |  |||||||||||| |||||||||||||||    
T  40837982 cctttatttattcatctactatcaaaa-agctaaaaatgttataataaactataatgtttattacccctaattgatcaacatttctcaaaacatatgtaa 40838080  T
Q  631 ctcttgtacctacggtatgtggaagcaagag 661  Q
    |||||||| ||||||||| ||||||||||||    
T  40838081 ctcttgtatctacggtatctggaagcaagag 40838111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 32676764 - 32676587
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttgcctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataa 586  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||   ||||||||||||||||| |||||| || |||||||||||||||||||| |||    
T  32676764 ttatttcattagaaaaagttataaaacaagatatcatattatttgatcttatttattcatctactatcaaaaaagttaaaaatgttataatcaactttaa 32676665  T
Q  587 tgtctattactcc--atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||  | ||  |  ||| |||||||| |||||||||||||||||||||||  |||  | |||||||||||||||    
T  32676664 tgtctatatccccctaattgaacaacatttctcaaaacatatgtaactcttgtatttacaatgtgtggaagcaagaga 32676587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 487 - 629
Target Start/End: Complemental strand, 38989379 - 38989237
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttgccttt-atttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||| |||||||||||||||||| || |||||||| ||||||||| |||| ||||||||||||||| ||||||||  |||||||| |||||||||  |||    
T  38989379 ttatgtcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaatgatataatcaa--ata 38989282  T
Q  586 atgtctattactcc-atgtgatcaacatttttcaaaacatatgta 629  Q
    |||||||| || || |  |||||||||||| || |||||||||||    
T  38989281 atgtctataacccctaattgatcaacatttatcgaaacatatgta 38989237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 40837667 - 40837743
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    |||||||| ||||||||||||| || ||||||||| || |  ||||||||||||| || ||||||||||||||||||    
T  40837667 ctatgaagtatggactccgacacggacacctgacacgataatgacacggacactttgataccgctagtgtaaaaaat 40837743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 531
Target Start/End: Original strand, 40837839 - 40837883
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg 531  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  40837839 ttatttcattagaaaaagttctaaaacaagatattgtagtatttg 40837883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 453
Target Start/End: Complemental strand, 32676929 - 32676860
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaa 453  Q
    |||||||||||||||||||||| || |||||||||      |||||| ||||| |||||||||||| |||||||||    
T  32676929 ctatgaagcatggactccgacacggacacctgaca------cgacactgacacgtcgacaccgctaatgtaaaaaa 32676860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 487 - 676
Target Start/End: Complemental strand, 48632712 - 48632522
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||  |||||||||||||| |||||| | ||||||||| ||||||||||||| |||||| |||||| ||||||||| ||| ||||||||| ||    
T  48632712 ttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaacttta 48632613  T
Q  586 atgtctattactcc--atgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaaggaaaaatgttt 676  Q
    || ||||| || ||  |  |||||||||||| |||| ||||||| |||||||||| ||||||| ||| ||| |||||||||  ||||||||||    
T  48632612 atttctataaccccgtaattgatcaacatttctcaacacatatgcaactcttgtatctacggtgtgtagaaccaagagaaa--aaaaatgttt 48632522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 486 - 594
Target Start/End: Original strand, 23431899 - 23432008
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| | || ||||||||||||||| |||||| || |||||||||||||||| ||  |    
T  23431899 gttatttcattagaaaaagttctaaaacaaaatatcgtagtatttgacattcatttattcatctactatcaaaaaagttaaaaatgttataatctacggt 23431998  T
Q  585 aatgtctatt 594  Q
    ||||||||||    
T  23431999 aatgtctatt 23432008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 486 - 582
Target Start/End: Original strand, 18476538 - 18476636
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttg--cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaact 582  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||  | |||||||||||||||||| |||||| |||||||||| || |||||||||    
T  18476538 gttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaaatattgtaatcaact 18476636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 487 - 662
Target Start/End: Original strand, 32740883 - 32741057
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatc--gtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaacta 583  Q
    |||||| ||||||||||||||   || ||||||||   ||||||||| |||||||||||||||||||  |||||| |||||||||||  |||||||| |     
T  32740883 ttatttaattagaaaaagttc---aacaagatatcatatagtatttgacctttatttattcatctaccatcaaaaaagctaaaaatg--ataatcaattg 32740977  T
Q  584 taatgtctatta-ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||||| | | |||  ||||||||||||  |||||||||||||||||||||| ||| ||| |||||||||||||||    
T  32740978 taatgtctataacccccaattgatcaacatttcacaaaacatatgtaactcttgtatctatggtgtgtggaagcaagaga 32741057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 593
Target Start/End: Complemental strand, 9149127 - 9149020
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||||||||||||||||  | ||||| |||||||| ||||||||  |||||||||||| ||||||| |||||| ||||||||||||||||  ||||| ||    
T  9149127 ttatttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatctactatcaaaaaagctaaaaatgttatagccaacttta 9149028  T
Q  586 atgtctat 593  Q
    ||||||||    
T  9149027 atgtctat 9149020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 532 - 634
Target Start/End: Original strand, 126331 - 126435
Alignment:
Q  532 cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtctattactcc---atgtgatcaacatttttcaaaacatatgt 628  Q
    |||||||||||||||||||| | |||| || |||||||||||||||||||| |||||||||| || ||   |  |||||||||||| |||||||||||||    
T  126331 cctttatttattcatctactattaaaa-agttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctcaaaacatatgt 126429  T
Q  629 aactct 634  Q
    ||||||    
T  126430 aactct 126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 487 - 619
Target Start/End: Original strand, 3954983 - 3955117
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||| |||||||||||||||||||||   | ||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||||| ||    
T  3954983 ttatttcattaaaaaaagttctaaaataagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaacgttgtaatcaacttta 3955082  T
Q  586 atgtctattactccatg-tgatcaacatttttcaa 619  Q
    || ||| | || || || |||||||||||| ||||    
T  3955083 atctctgtaaccccttgttgatcaacatttctcaa 3955117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 23431728 - 23431835
Alignment:
Q  379 tatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaattaatataggataccaacactactg 478  Q
    ||||||||||||||||||||| || ||||||| | ||||| |||||  ||||||| |||| | |||||||||||   ||||||||||||| ||| | ||     
T  23431728 tatgaagcatggactccgacacggacacctgatacgacactgacacaaacacttcaacactggtagtgtaaaaa---aatataggataccgacagtgcta 23431824  T
Q  479 catatatgtta 489  Q
    |||||||||||    
T  23431825 catatatgtta 23431835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 605 - 676
Target Start/End: Original strand, 18488362 - 18488433
Alignment:
Q  605 atcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaaggaaaaatgttt 676  Q
    |||||||||| |||||||| |||||||||||| | ||||| ||||||||||||||||| |  ||||||||||    
T  18488362 atcaacatttctcaaaacacatgtaactcttggatctacgatatgtggaagcaagagagaaaaaaaatgttt 18488433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 593
Target Start/End: Original strand, 3387688 - 3387795
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||||| |||| ||||||||||| || ||||||   ||||||||| |||||||||||||||||||  || ||| |  |||||| ||| ||||||||| ||    
T  3387688 ttattttattaaaaaaagttctataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaacttta 3387787  T
Q  586 atgtctat 593  Q
    ||||||||    
T  3387788 atgtctat 3387795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 487 - 662
Target Start/End: Complemental strand, 15850585 - 15850418
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttgcc-tttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||||||||||||||||||| ||||| ||||||||  |||||||| | |||||||||||||||||| |||||| |||||||||||||||               
T  15850585 ttatttcattagaaaaagttataaaacaagatatcacagtatttgacatttatttattcatctactatcaaaaaagctaaaaatgttat----------- 15850497  T
Q  586 atgtctattac--tccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||| ||   |||  |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  15850496 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagaga 15850418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 487 - 662
Target Start/End: Original strand, 28421074 - 28421251
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||| ||||||||||||||| || || |||||||| ||  ||||| |||||||||||||||||||| |||||| ||||||||| | ||||||||||||||    
T  28421074 ttatgtcattagaaaaagttttacaacaagatatcatatgatttgacctttatttattcatctactatcaaaaaagctaaaaacgatataatcaactata 28421173  T
Q  586 atgtctatta-ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagaga 662  Q
    |||||||| | | | |  ||||||| |||| |||||| |||||||||||||||| ||| ||| || |||||| |||||    
T  28421174 atgtctataaccactaattgatcaagatttctcaaaatatatgtaactcttgtatctatggtgtgcggaagcgagaga 28421251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 499 - 638
Target Start/End: Complemental strand, 15132085 - 15131944
Alignment:
Q  499 aaaaagttctaaaataagatatcgtagtatttgc-ctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtctattact 597  Q
    ||||||||||| |  |||||||| |||||||||  ||||||||||| ||||||| || ||| ||||||||||| |||||||||||||||||||||| ||     
T  15132085 aaaaagttctacagcaagatatcatagtatttgatctttatttatttatctactatcgaaaaagctaaaaatgatataatcaactataatgtctataacc 15131986  T
Q  598 cc-atgtgatcaacatttttcaaaacatatgtaactcttgta 638  Q
    || |  ||||||| |||| | |||||||||||||||| ||||    
T  15131985 cctaattgatcaatatttctaaaaacatatgtaactcctgta 15131944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 630
Target Start/End: Original strand, 44502324 - 44502469
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||| | ||||||||||| || |||||||| || |||||| ||||||||||||||||| || |||||| || |||||||  ||||||||||||||    
T  44502324 ttatttcatcataaaaagttctacaacaagatatcatactatttgacctttatttattcatctgctatcaaaaaagttaaaaataatataatcaactata 44502423  T
Q  586 atgtctattactcc-atgtgatcaacatttttcaaaacatatgtaa 630  Q
    |||||||| || || |    |||||||||| |||||||||||||||    
T  44502424 atgtctataacccctaatcaatcaacatttctcaaaacatatgtaa 44502469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 662
Target Start/End: Complemental strand, 18603187 - 18603021
Alignment:
Q  486 gttatttcattagaaaaagttctaaaataagatatcgtagtatttgc-ctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactat 584  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||  |||||||||             |||| ||||||||||||||||||||| | |    
T  18603187 gttatttcattagaaaaagttttaaaacacgatatcgtagtatttgatctttattta-------------aaaaaagctaaaaatgttataatcaattgt 18603101  T
Q  585 aatgtctatt-actccatgtgatcaacatttttcaaaacatatgtaactcttgta-cctacggtatgtggaagcaagaga 662  Q
    |||||| ||| || | |  |||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||    
T  18603100 aatgtcaattcaccctaattgatcaacatttctcaaaacatatgtaactcttgtatcataccgtatgtggaagcaagaga 18603021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 487 - 672
Target Start/End: Original strand, 1226089 - 1226276
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttgc-ctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||  |||||||| ||||| |||||| |  ||||||||  ||||||||||||||||||| |||||| |  |||||||||| ||||||||| ||    
T  1226089 ttatttcattgaaaaaagttataaaacaagataccagagtatttgatctttatttattcatctactatcaaaa-atttaaaaatgttgtaatcaacttta 1226187  T
Q  586 atgtctatta--ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacggtatgtggaagcaagagaaaggaaaaat 672  Q
    || ||||| |  ||| |  |||| ||||||| |||| |||||| ||||||||||| ||||| | |||||||  |||||| || ||||||    
T  1226188 atttctataaacctctaattgattaacatttctcaacacatatttaactcttgtatctacgatgtgtggaataaagagagagaaaaaat 1226276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 378 - 454
Target Start/End: Complemental strand, 15850757 - 15850681
Alignment:
Q  378 ctatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaat 454  Q
    ||||||| |||||||||||||| || ||||||||| ||||| || | |||||||||||||| | |||||||||||||    
T  15850757 ctatgaaacatggactccgacacggacacctgacacgacactgatatggacacttcgacactgttagtgtaaaaaat 15850681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 593
Target Start/End: Complemental strand, 18393680 - 18393573
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    |||||| |||| |||||||| || || ||||||   ||||||||| ||||||||||| |||||||| |||||| |  |||||| ||| ||||||||| ||    
T  18393680 ttattttattaaaaaaagttttataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaacttta 18393581  T
Q  586 atgtctat 593  Q
    ||||||||    
T  18393580 atgtctat 18393573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 453
Target Start/End: Original strand, 27401685 - 27401759
Alignment:
Q  379 tatgaagcatggactccgacatggccacctgacaggacaccgacacggacacttcgacaccgctagtgtaaaaaa 453  Q
    |||||||||  ||||| |||| || ||||||| ||||||| |||||||||||  | ||||||||| |||||||||    
T  27401685 tatgaagcacagactctgacacggacacctgataggacactgacacggacacgccaacaccgctaatgtaaaaaa 27401759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 618
Target Start/End: Original strand, 27401856 - 27401989
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtattt-gcctttatttattcatctactgtcaaaagagctaaaaatgttataatcaactata 585  Q
    ||||||||||| |||||||| || || ||||||   ||| |||| |||||||||||| |||||||| |  |||||   ||||| ||| ||||||||| ||    
T  27401856 ttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttatttatccatctactattgaaagaaaaaaaaacgttgtaatcaacttta 27401955  T
Q  586 atgtctattactccatg-tgatcaacatttttca 618  Q
    |||||||| || ||  | ||||||||||||||||    
T  27401956 atgtctataacccctcgttgatcaacatttttca 27401989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 487 - 558
Target Start/End: Original strand, 37855193 - 37855265
Alignment:
Q  487 ttatttcattagaaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctactgtcaaaa 558  Q
    ||||||||| |||||||||| |  || |||||||  ||||||||  |||||||||||||||||||| ||||||    
T  37855193 ttatttcatgagaaaaagttatgcaacaagatataatagtatttaacctttatttattcatctactatcaaaa 37855265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 593
Target Start/End: Original strand, 12923 - 13018
Alignment:
Q  499 aaaaagttctaaaataagatatcgtagtatttgcc-tttatttattcatctactgtcaaaagagctaaaaatgttataatcaactataatgtctat 593  Q
    ||||||||| |||| ||||| || ||||||||| | |||||||||||||||||| |||||| |||||||||  || ||||||||| |||| |||||    
T  12923 aaaaagttcgaaaacaagatgtcctagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatcaactttaatttctat 13018  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 644
Target Start/End: Complemental strand, 70190 - 70040
Alignment:
Q  499 aaaaagttctaaaataagatatcgtagtatttg-cctttatttattcatctact-----gtcaaaagagctaaaaatgttataatcaactataatgtcta 592  Q
    |||||||||||||| |||||||| ||||||||| | |||||||||||||||| |     |  |||| |||||||||||   ||||||||| |||| ||||    
T  70190 aaaaagttctaaaacaagatatcatagtatttgacatttatttattcatctaatataaagaaaaaaaagctaaaaatg---taatcaactttaatttcta 70094  T
Q  593 tta--ctccatgtgatcaacatttttcaaaacatatgtaactcttgtacctacg 644  Q
    | |  ||| |  |||||||||||| |||| |||||||||| ||||||| |||||    
T  70093 taaccctctaattgatcaacatttctcaacacatatgtaattcttgtatctacg 70040  T

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