View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1524-Insertion-5 (Length: 670)

Name: NF1524-Insertion-5
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1524-Insertion-5
NF1524-Insertion-5
[»] chr4 (12 HSPs)
chr4 (6-538)||(35334985-35335517)
chr4 (6-274)||(35335378-35335649)
chr4 (27-292)||(35335492-35335760)
chr4 (41-108)||(16592029-16592096)
chr4 (413-503)||(16592167-16592257)
chr4 (31-108)||(16602469-16602546)
chr4 (402-457)||(35327002-35327057)
chr4 (413-488)||(16602671-16602746)
chr4 (38-139)||(16591906-16592004)
chr4 (419-452)||(5342486-5342519)
chr4 (174-240)||(16592030-16592096)
chr4 (154-240)||(16602460-16602546)
[»] chr3 (1 HSPs)
chr3 (405-470)||(3175390-3175455)
[»] chr5 (1 HSPs)
chr5 (405-451)||(20964465-20964511)
[»] chr1 (1 HSPs)
chr1 (24-70)||(24541009-24541055)
[»] chr8 (1 HSPs)
chr8 (419-451)||(38542112-38542144)


Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 6 - 538
Target Start/End: Complemental strand, 35335517 - 35334985
Alignment:
Q  6 cacaaacatgttccaattcatcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgc 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  35335517 cacaaacatgttccagttcatcctcctcatcatgctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgc 35335418  T
Q  106 atcaccaccagcctcctgctcatgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335417 atcaccaccagcctcctgctcatgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccc 35335318  T
Q  206 tctaactcatgcccctattcaaccaccaacacatccccaccctcctgctcacgcccctgctcacaaacacattccaattcaccctccattccacgcccat 305  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335317 tctaactcatgcgcctattcaaccaccaacacatcaccaccctcctgctcacgcccctgctcacaaacacattccaattcaccctccattccacgcccat 35335218  T
Q  306 gtacctactaaatctccaactcccaaccctcacccccaccatcatcacactcctgctcttgcccctgctcacacaccactgcgttcaattttccatccta 405  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335217 gtacctactaaatctccaactcccaaccctcacccccgccatcatcacactcctgctcttgcccctgctcacacaccactgcgttcaattttccatccta 35335118  T
Q  406 gaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatctataattggtttgtctct 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35335117 gaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgctggaggtgacacccttttgggtgctacatctataattggtttgtctct 35335018  T
Q  506 taactttcatgtttgctttgttctttcatatca 538  Q
    ||||||||||| |||||||||||||||||||||    
T  35335017 taactttcatgattgctttgttctttcatatca 35334985  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 35335649 - 35335378
Alignment:
Q  6 cacaaacatgttccaattcatcctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgc 105  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||| |    
T  35335649 cacaaacatgttccagttcatcctcctcaccatgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacac 35335550  T
Q  106 atcaccaccagcctcctgctcatgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccc 205  Q
    ||| ||| ||  ||||||||||||| ||| ||||||||||||||||||| ||||||||||  ||||| ||||||||||| |||||   |||||||| |||    
T  35335549 atcgccatcactctcctgctcatgctcctattcacaaacatgttccagttcatcctcctcatcatgctaaacctccaacccatcatcgccatcaacaccc 35335450  T
Q  206 tctaactcatgcccctattcaaccaccaacacatccccac---cctcctgctcacgcccctgctcacaaaca 274  Q
    ||  |||||| ||||| ||||||| ||||| |||| ||||   ||||||||||| ||||||| |||||||||    
T  35335449 tcctactcattcccctgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgttcacaaaca 35335378  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 27 - 292
Target Start/End: Complemental strand, 35335760 - 35335492
Alignment:
Q  27 cctcctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctc 126  Q
    |||||||||||| ||||||| |||||||||| ||  |||||||| |||||||||||  ||| ||||||||||||||| |||||||||||  |||||||||    
T  35335760 cctcctcatcatactaaacccccaacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctccaacacatcaccaccactctcctgctc 35335661  T
Q  127 atgcccctgttcacaaacatgttccagtacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattca 226  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||   ||||||| | |||   ||||| ||||||||||    
T  35335660 atgcccctgttcacaaacatgttccagttcatcctcctcaccatgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattca 35335561  T
Q  227 accaccaacacatccc---caccctcctgctcacgcccctgctcacaaacacattccaattcaccctcc 292  Q
    ||| |||||||||| |   ||| |||||||||| || |||  |||||||||  ||||| |||| |||||    
T  35335560 acctccaacacatcgccatcactctcctgctcatgctcctattcacaaacatgttccagttcatcctcc 35335492  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 16592029 - 16592096
Alignment:
Q  41 taaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc 108  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  16592029 taaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16592096  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 413 - 503
Target Start/End: Original strand, 16592167 - 16592257
Alignment:
Q  413 aatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatctataattggtttgtct 503  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||| |  |||||||||| | | ||||||||||    
T  16592167 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccctttcgaatgctacatctcttaatggtttgtct 16592257  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 16602469 - 16602546
Alignment:
Q  31 ctcatcatgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatc 108  Q
    |||| |||||||||||||||||||||| |  |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  16602469 ctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16602546  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 35327057 - 35327002
Alignment:
Q  402 cctagaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgc 457  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  35327057 cctagaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgc 35327002  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 413 - 488
Target Start/End: Original strand, 16602671 - 16602746
Alignment:
Q  413 aatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatct 488  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||| ||| ||||||| |  ||||||||||    
T  16602671 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgaaaccctttcgaatgctacatct 16602746  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 16591906 - 16592004
Alignment:
Q  38 tgctaaacctccaacccatcaccgccatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgtt 137  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||| ||| | |||||||| || | ||||| |||   |||||| ||||||||||| ||    
T  16591906 tgctaaacctccaacccgtcaccaccaccaacaccctcctgctcatgcccctcttcaaccttcatcccatcaacac---cctccttctcatgcccctatt 16592002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 5342486 - 5342519
Alignment:
Q  419 tgttcaaggtgttgtttatgtcaaatcttgcaag 452  Q
    ||||||||||||||||||||||||||||||||||    
T  5342486 tgttcaaggtgttgtttatgtcaaatcttgcaag 5342519  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 16592030 - 16592096
Alignment:
Q  174 aaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatc 240  Q
    ||||||||||| |||||| ||||||||| |||||   ||||||||||| ||||||| ||||| ||||    
T  16592030 aaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16592096  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 16602460 - 16602546
Alignment:
Q  154 tacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatc 240  Q
    |||| ||| ||| |||||| ||||||||||| |||| | ||||||||| |||||   ||||||||||| ||||||| ||||| ||||    
T  16602460 tacacccttctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16602546  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 470
Target Start/End: Complemental strand, 3175455 - 3175390
Alignment:
Q  405 agaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacc 470  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||| ||| |||| | |||||||    
T  3175455 agaagcttgatagctgttgaaggtgttgtttatgtcaaatcatgcaaccataccggtgttgacacc 3175390  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 451
Target Start/End: Original strand, 20964465 - 20964511
Alignment:
Q  405 agaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaa 451  Q
    |||||||| |||| |||| |||| |||||||||||||||||||||||    
T  20964465 agaagcttgatagttgttgaaggagttgtttatgtcaaatcttgcaa 20964511  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 24541055 - 24541009
Alignment:
Q  24 catcctcctcatcatgctaaacctccaacccatcaccgccatcaaca 70  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||    
T  24541055 catcctcctcaccctgccaaacctccaacccatcaccgccaccaaca 24541009  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 38542144 - 38542112
Alignment:
Q  419 tgttcaaggtgttgtttatgtcaaatcttgcaa 451  Q
    ||||| |||||||||||||||||||||||||||    
T  38542144 tgttcgaggtgttgtttatgtcaaatcttgcaa 38542112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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