View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524-Insertion-8 (Length: 563)
Name: NF1524-Insertion-8
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524-Insertion-8 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 524; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Complemental strand, 9658120 - 9657565
Alignment:
| Q |
8 |
gggccttccctcccaaccccgttttttcatctagaaagggatctaagttcagttccactcagacttcgatacatttgcttattgaaaatccgagttcatg |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9658120 |
gggccttccctccaaaccccgttttttcatctagaaagggatctaagttcagttccactcagacttcgatacattttcttattgaaaatccgagttcatg |
9658021 |
T |
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| Q |
108 |
ttgaatttgcttattgaaagattgaagtcctagtgtagactgcataagttattaaatgtcaactgagagttgatatattttgtgtactatattgcagggt |
207 |
Q |
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| T |
9658020 |
ttgaatttgcttattgaaagattgaagtcctagtgtagactgcataggttattaaatgtcaactgagagttgatatattttgtgtactatattgcagggt |
9657921 |
T |
|
| Q |
208 |
tgcttggttgattggttggtccttaatattggaatatggtattggtggagctgctgttgctcgtggcataacccccaatttggtacagtgattttactct |
307 |
Q |
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| T |
9657920 |
tgcttggttgataggttggtccttaatattggaatatggtattggtggagctgctgttgctcgtggcataacccccaatttggtacagtgattttactct |
9657821 |
T |
|
| Q |
308 |
attaatttatttaggttctttgcgataaaccaatgtaccttttcttcgcatttgcatatattaatctctcgaggtaattgaaatgcttctaaggagttga |
407 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9657820 |
attaatttatttaggttttttgcgataaaccaatttaccttttcttcgcatttgcatatattaatctctcgaggtaattgaaatgcttctaaggagttga |
9657721 |
T |
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| Q |
408 |
tctagaaattatttgatgtaagtgttgatatgaaatttatatttttctgattaggctgcccttattggaggtgtggacaatttgccaggatttttatcca |
507 |
Q |
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| T |
9657720 |
tctagaaattatttgatgtaagtgttgatatgaaatttatatttttctgattaggctgcccttattggaggtgtggaaaacttgccaggatttttatcca |
9657621 |
T |
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| Q |
508 |
atcaacatattcctgggattgatattgttgtagacccactttcagcaattatggtg |
563 |
Q |
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| T |
9657620 |
atcaacatattcctgggattgatattgttgtagacccactttcagcaattatggtg |
9657565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 428 - 562
Target Start/End: Complemental strand, 9640953 - 9640819
Alignment:
| Q |
428 |
agtgttgatatgaaatttatatttttctgattaggctgcccttattggaggtgtggacaatttgccaggatttttatccaatcaacatattcctgggatt |
527 |
Q |
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| T |
9640953 |
agtgttgaaatgagattaatatttctttgattaggctgcacttattggaggagtggacaacttgccaagatttttatcctatcaacgtattcctgggatt |
9640854 |
T |
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| Q |
528 |
gatattgttgtagacccactttcagcaattatggt |
562 |
Q |
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| T |
9640853 |
gatattgatgtagacccactttcagcatttatggt |
9640819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 448 - 562
Target Start/End: Complemental strand, 9632530 - 9632416
Alignment:
| Q |
448 |
atttttctgattaggctgcccttattggaggtgtggacaatttgccaggatttttatccaatcaacatattcctgggattgatattgttgtagacccact |
547 |
Q |
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|||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |
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| T |
9632530 |
atttttgtgattaggctgcacttattggaggtatggacaacttgccaggatttttatcatatcaacatatacctgggattgatattgatgtagacccact |
9632431 |
T |
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| Q |
548 |
ttcagcaattatggt |
562 |
Q |
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| T |
9632430 |
tgcagcaattatggt |
9632416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 459 - 562
Target Start/End: Complemental strand, 9617769 - 9617666
Alignment:
| Q |
459 |
taggctgcccttattggaggtgtggacaatttgccaggatttttatccaatcaacatattcctgggattgatattgttgtagacccactttcagcaatta |
558 |
Q |
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|||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9617769 |
taggctgcacttattggaggtatggacaacttgccaggatttttatcatatcaacatattcctgggattgatattgttgtagacccacttgcagcaattg |
9617670 |
T |
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| Q |
559 |
tggt |
562 |
Q |
| |
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|||| |
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| T |
9617669 |
tggt |
9617666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 9641365 - 9641272
Alignment:
| Q |
199 |
ttgcagggttgcttggttgattggttggtccttaatattggaatatggtattggtggagctgctgttgctcgtggcataacccccaatttggta |
292 |
Q |
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| T |
9641365 |
ttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagctgctgtcgctcgtggcattacccctaatttggta |
9641272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 9618054 - 9617954
Alignment:
| Q |
203 |
agggttgcttggttgattggttggtccttaatattggaatatggtattggtggagctgctgttgctcgtggcataacccccaatttggtacagtgatttt |
302 |
Q |
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|||||||||||||||||||| |||||||||| ||||| || ||||||||||||| | ||||||||||||||||||||||||||||| |||| |||| |
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| T |
9618054 |
agggttgcttggttgattggctggtccttaactctggaagttgtgattggtggagctgttattgctcgtggcataacccccaatttggtatagtgttttt |
9617955 |
T |
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| Q |
303 |
a |
303 |
Q |
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| T |
9617954 |
a |
9617954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 292
Target Start/End: Complemental strand, 9632725 - 9632598
Alignment:
| Q |
164 |
tgtcaactgagagttgatatattttgtgtactatatt-gcagggttgcttggttgattggttggtccttaatattggaatatggtattggtggagctgct |
262 |
Q |
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|||||| |||||||||||| ||| ||| ||||| || |||||||||||||||||||||| |||||||||| ||||| || |||| ||||||| | |
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| T |
9632725 |
tgtcaattgagagttgataaatt--gtgcactatgtttgcagggttgcttggttgattggctggtccttaactctggaaactgtggttggcggagctgtt |
9632628 |
T |
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| Q |
263 |
gttgctcgtggcataacccccaatttggta |
292 |
Q |
| |
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|||||||||||||||||||| ||||||||| |
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| T |
9632627 |
gttgctcgtggcataaccccaaatttggta |
9632598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 33642315 - 33642391
Alignment:
| Q |
206 |
gttgcttggttgattggttggtccttaatattggaatatggtattggtggagctgctgttgctcgtggcataacccc |
282 |
Q |
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| T |
33642315 |
gttgcttggttgatcggctgggccttgttactggaatatacgattggtagcgctgctgttgctcgtggcataacccc |
33642391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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