View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1524-Insertion-9 (Length: 560)
Name: NF1524-Insertion-9
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524-Insertion-9 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 366 - 560
Target Start/End: Original strand, 5731805 - 5731995
Alignment:
| Q |
366 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5731805 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
5731904 |
T |
|
| Q |
466 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcctct--gtccctaatttccacccttcttcttcctcaactcaaaccttccctc |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
5731905 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcttcttcttccc---ttttcacc---cttcttcctcaactcaaaccttccctc |
5731995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 18182291 - 18182372
Alignment:
| Q |
183 |
agaatactattttgatcgatttatcaaataatttttatcaataaaacaatatcgtcattttaattcgtatagtcaaattctc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18182291 |
agaatactattttgatcgatttatcaaataatttttatcaataaaacaatatcgtcattttaattcgtatagtcaaattctc |
18182372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 5731645 - 5731701
Alignment:
| Q |
8 |
aacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5731645 |
aacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
5731701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 18182424 - 18182464
Alignment:
| Q |
316 |
aagaataaataataaatagaattcatatttttatctaatct |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18182424 |
aagaataaataataaatagaattcatattttcatctaatct |
18182464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 366 - 560
Target Start/End: Original strand, 18655575 - 18655765
Alignment:
| Q |
366 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18655575 |
tcttcaacaacttcatccaccatcatcaaaaatccagaaatttatcatcttcaaacccaaatccataaattcaaaaatatccaactgaaacacgtagaat |
18655674 |
T |
|
| Q |
466 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcctct--gtccctaatttccacccttcttcttcctcaactcaaaccttccctc |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
18655675 |
caaaccaaactaattaatttgcactagataaaattctgcttctgcttcttcttccc---ttttcacc---cttcttcctcaactcaaaccttccctc |
18655765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 18655415 - 18655471
Alignment:
| Q |
8 |
aacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18655415 |
aacgtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
18655471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 18160931 - 18160878
Alignment:
| Q |
11 |
gtggcagacaatgctgacgtgacaaactggattataagtcacacatggagaggg |
64 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
18160931 |
gtggcagacgacgctgacgtgacaaactggatgataagtcacacagtgagaggg |
18160878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 51300049 - 51300004
Alignment:
| Q |
397 |
atccagaaatttatcatcttcaaacccaaatccataaattcaaaaa |
442 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
51300049 |
atccagaaattcatcactttcaaacccaaatccagaaattcaaaaa |
51300004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University