View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15240_high_2 (Length: 320)
Name: NF15240_high_2
Description: NF15240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15240_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 94 - 303
Target Start/End: Original strand, 21272838 - 21273047
Alignment:
| Q |
94 |
taaggatatttggttaagccattaaattacctactgtaattcatgatccaaagtattatatataggtaaaaataaaagtagagaaggcactctagggcaa |
193 |
Q |
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| T |
21272838 |
taaggatatttggttaagccattaaattacctactgtaattcatgatccaaagtattatatataagtaaaaataaaattagagaaggcactctagggcaa |
21272937 |
T |
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| Q |
194 |
caatattaataattgttcacatttttctacattaaaattgcatatctcatactatcatttaccataatatgattgatctcagaaatttggccaaattcac |
293 |
Q |
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| T |
21272938 |
caatattaataattgttcacatttttctacattaaaattgcatatctcatactatcatttaccataatatgattgatctcagaaatttggccaaattcac |
21273037 |
T |
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| Q |
294 |
cagtggacca |
303 |
Q |
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|||||||||| |
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| T |
21273038 |
cagtggacca |
21273047 |
T |
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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 38429879 - 38429959
Alignment:
| Q |
215 |
tttttctacattaaaattgcatatctcatactatcatttaccataatatgattgatctcagaaatttggccaaattcacca |
295 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||| | |||||| || ||||||||||| |||||||||| |
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| T |
38429879 |
tttttctacatcaaaattgcatatctcatgctatcatttaccatgagatgattcatttcagaaatttgtgaaaattcacca |
38429959 |
T |
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