View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15240_high_3 (Length: 268)
Name: NF15240_high_3
Description: NF15240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15240_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 3238366 - 3238099
Alignment:
| Q |
1 |
gcagcggtactatagatagcgaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaatacagcggcaatagcgacactatagacctgt |
100 |
Q |
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| T |
3238366 |
gcagcggtactatagatagcgaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaatacagcggcaatagcgacactatagacctgt |
3238267 |
T |
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| Q |
101 |
tgcaaatcgaaatttgaatgagctgctattttccgcgatcggggattgatagacaacatcaaatatgttatattatgattattattctatgtttgataca |
200 |
Q |
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| T |
3238266 |
tgcaaatcgaaatttgaatgagctgctattttccgcgatcggggattgatagacaacatcaaatatgttatattatgattattattctatgtttgataca |
3238167 |
T |
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| Q |
201 |
catctaataacaaacagatagcgtgtgtatatcacattcaaatgacaacatacctgtttcgaaagaat |
268 |
Q |
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| T |
3238166 |
catctaataacaaacagatagcgtgtgtatatcacattcaaatgacaacatacctgtttcgaaagaat |
3238099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 48198123 - 48198079
Alignment:
| Q |
24 |
tttgaactaatcgctattgttctgcaatatgttaattagtacaaa |
68 |
Q |
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| T |
48198123 |
tttgaactaatcgctattgttctgtgatatgttatttagtacaaa |
48198079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 16169232 - 16169188
Alignment:
| Q |
23 |
atttgaactaatcgctattgttctgcaatatgttaattagtacaa |
67 |
Q |
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| T |
16169232 |
atttgaactaatcgctattgttctgcgatatgctattgagtacaa |
16169188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 20981269 - 20981319
Alignment:
| Q |
21 |
gaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaata |
71 |
Q |
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||||||||||||||| |||||||||||||||| | || |||||| |||||| |
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| T |
20981269 |
gaatttgaactaatcactattgttctgcaatacgctatttagtataaaata |
20981319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 39647189 - 39647140
Alignment:
| Q |
21 |
gaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaat |
70 |
Q |
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|||||||||| ||||| ||||||||||| ||||| || |||||||||||| |
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| T |
39647189 |
gaatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaat |
39647140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 55314496 - 55314542
Alignment:
| Q |
22 |
aatttgaactaatcgctattgttctgcaatatgttaattagtacaaa |
68 |
Q |
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||||||||| ||| ||||||||||||| ||||| ||||||||||||| |
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| T |
55314496 |
aatttgaacaaattgctattgttctgcgatatgctaattagtacaaa |
55314542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 2732936 - 2732984
Alignment:
| Q |
22 |
aatttgaactaatcgctattgttctgcaatatgttaattagtacaaaat |
70 |
Q |
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||||||||| ||||||||||||| ||| ||||| || |||||||||||| |
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| T |
2732936 |
aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaat |
2732984 |
T |
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