View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15241_high_3 (Length: 338)
Name: NF15241_high_3
Description: NF15241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15241_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 41558246 - 41557925
Alignment:
| Q |
1 |
cctgagattatgaatatttagaaagggtttgttacactattaaaatctcaagatgatccctatgtttaaccattaaatattacttagatccctatatcaa |
100 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41558246 |
cctgagattatgaatatttcgaaaaggtttgttacactattaaactctcaagatgatccctatgtttaaccattaaatattacttagatccctatatcaa |
41558147 |
T |
|
| Q |
101 |
tttggtccttatatttaaccacttaccaccaatttagtccctagcatgctttcagaagttctaacagaagtaaaatttgacagagtcacacaccttttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41558146 |
tttggtccttatatttaaccacttaccaccaatttagtccctagcatgctttcagaagttctaacagaagtaaaatttgacagagtcacacaccttttaa |
41558047 |
T |
|
| Q |
201 |
aaatattcataatctcaatgatcaaggacgaatttagtggtttaatggaacattacacattgatgaaaatataaaaagatagagtgagtgacctaatctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41558046 |
aaatattcataatctcaatgatcaaggacgaatttagtggtttaatggaacattacacattgatgaaaatataaaaagatagagtgagtgacctaatctg |
41557947 |
T |
|
| Q |
301 |
cgaacatgggtttccttgcaaa |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41557946 |
cgaacatgggtttccttgcaaa |
41557925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 41542225 - 41542161
Alignment:
| Q |
255 |
acacattgatgaaaatataaaaagatagagtgagtgacctaatctgcgaacatgggtttccttgcaaa |
322 |
Q |
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| T |
41542225 |
acacattgatgaaagta---aaagatagagtgaatgacctaatctatgaacacgtgtttccttgcaaa |
41542161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 987476 - 987360
Alignment:
| Q |
97 |
tcaatttggtccttatatttaaccacttaccaccaatttagtccctagcatgctttcagaagttctaacagaagtaaaatttgacagagtcacacacctt |
196 |
Q |
| |
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|||||||||||| ||| |||||||||||| || |||||||||| || |||| ||||||||| |||| | ||| |||||||||| ||||| ||||| |
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| T |
987476 |
tcaatttggtccctatctttaaccacttatcattaatttagtccttaacatgttttcagaaggactaatatgagtgaaatttgacaaagtcagggacctt |
987377 |
T |
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| Q |
197 |
ttaaaaatattcataat |
213 |
Q |
| |
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| T |
987376 |
tttgaaatattcataat |
987360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 9394629 - 9394585
Alignment:
| Q |
95 |
tatcaatttggtccttatatttaaccacttaccaccaatttagtc |
139 |
Q |
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| T |
9394629 |
tatcaatttgggccatatatttaaccacttactatcaatttagtc |
9394585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 1315079 - 1315126
Alignment:
| Q |
95 |
tatcaatttggtccttatatttaaccacttaccaccaatttagtccct |
142 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||||||||||| |
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|
| T |
1315079 |
tatcaatttgatccttatatttaaccacttaatatcaatttagtccct |
1315126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 19049596 - 19049548
Alignment:
| Q |
169 |
agtaaaatttgacagagtcacacaccttttaaaaatattcataatctca |
217 |
Q |
| |
|
||||||||| ||||||||| | ||||||| |||||||||||||||||| |
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| T |
19049596 |
agtaaaattcgacagagtccgagaccttttcaaaatattcataatctca |
19049548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 3332609 - 3332564
Alignment:
| Q |
95 |
tatcaatttggtccttatatttaaccacttaccaccaatttagtcc |
140 |
Q |
| |
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||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
3332609 |
tatcaatttggtctgtatatttaaccacttactatcaatttagtcc |
3332564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 1074212 - 1074172
Alignment:
| Q |
95 |
tatcaatttggtccttatatttaaccacttaccaccaattt |
135 |
Q |
| |
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||||||||||||||||||||||| |||||||| | |||||| |
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| T |
1074212 |
tatcaatttggtccttatatttagccacttactatcaattt |
1074172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 31888828 - 31888776
Alignment:
| Q |
95 |
tatcaatttggtccttatatttaaccacttaccaccaatttagtccctagcat |
147 |
Q |
| |
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|||||| || ||||||||||||||| | |||||| ||||| |||||||||||| |
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| T |
31888828 |
tatcaaattagtccttatatttaacaagttaccatcaattcagtccctagcat |
31888776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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