View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15241_low_1 (Length: 491)
Name: NF15241_low_1
Description: NF15241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15241_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 72 - 480
Target Start/End: Complemental strand, 3090027 - 3089620
Alignment:
| Q |
72 |
ttgcatgtgtttccaagcttaatagtgagaaagtactaacaatttgttgcttttgatcaaccaatatttggtgagagagcaacaaagaatcaagcagcca |
171 |
Q |
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| T |
3090027 |
ttgcatgtgtttccaagcttaacagtgagaaagtactaacaattttttgcttttgatcaaccaatatttggtgagagagcaacaaaaaatcaagcaggca |
3089928 |
T |
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| Q |
172 |
ttaacaattaagaagaaatggagttagaccctatgatcagtggttattgacaaattcaaacaactaattttctggtcactgtgttgatgagtttgcttaa |
271 |
Q |
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| T |
3089927 |
ttaacaattaagaagaaatggagttagaccctatgatcaatggttattgacaaattcaaacaactaattttctggtcactgtgttgatgagtttgcttaa |
3089828 |
T |
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| Q |
272 |
gtagctgctacaaatccttcttcagagtctccaaacacttggttcaaaatcatggctaatcgaattccgccttgagcaattcgtttcatgacatatggca |
371 |
Q |
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| T |
3089827 |
gtagctgctacaaatccttcttcagagtctccaaacacttggttcaaaatcatggctaatcgaattccaccttgagcaattcgcttcatgacatatggca |
3089728 |
T |
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| Q |
372 |
tccttgagtcaaagtatttttctgcaaaaaccacatgcgcaacaaaatcctttaacatgcaatgaattgatgaatatgccaaattgatgctaatatatat |
471 |
Q |
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| T |
3089727 |
tccttgagtcaaagtatttttctgcaaaaaccacatgcgcaacaaaatcctttaacatgcaatgaa-tgatgaatatgccaaattgatgctaatatatat |
3089629 |
T |
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| Q |
472 |
gcaagtatt |
480 |
Q |
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| T |
3089628 |
gcaagtatt |
3089620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 3091081 - 3091039
Alignment:
| Q |
19 |
cgacatcaatgtcaacaaggaccctttcaaaatggttgaaatc |
61 |
Q |
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| T |
3091081 |
cgacatcaatgtcaacaaggacccttgcaaaatggttgaaatc |
3091039 |
T |
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