View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15241_low_3 (Length: 383)
Name: NF15241_low_3
Description: NF15241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15241_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 144 - 376
Target Start/End: Original strand, 33251205 - 33251437
Alignment:
| Q |
144 |
atacctgaataagcttcttgaatgttctgaaatttacacttggcttcgctaagtaaagaaggtgttcttgtccacctatctggatgccattgctgcatgc |
243 |
Q |
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| T |
33251205 |
atacctgaataagcttcttgaatgttctgaaatttacacttggcttcgctaagtaaagaaggtgttcttgtccacctatctggatgccattgctgcatgc |
33251304 |
T |
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| Q |
244 |
attgaaattcacaatcagcacctcacattcaaatttgaataacaatgcaaattcccaaaaagaaagcaactataattaactaaccatagcaagcttccta |
343 |
Q |
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| T |
33251305 |
attgaaattcacaatcagcacctcacattcaaatttgaataacaatgcaaattcccaaaaagaaagcaactataattaactaaccatagcaagcttccta |
33251404 |
T |
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| Q |
344 |
taagcacgccttatttcatctaaagaataatct |
376 |
Q |
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| T |
33251405 |
taagcacgccttatttcatctatagaagaatct |
33251437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 33251068 - 33251103
Alignment:
| Q |
18 |
acatacttcttttcttgggatcagatagcactgctc |
53 |
Q |
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| T |
33251068 |
acatacttcttttcttgggatcagatagcactgctc |
33251103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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