View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15242_high_6 (Length: 251)
Name: NF15242_high_6
Description: NF15242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15242_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 21052867 - 21053022
Alignment:
| Q |
1 |
aacatttaagagactaaattgaaattaagtgattaaatataaagaccaaattcataattaattgttaaaatacaacaatataattgatattaagtgtcta |
100 |
Q |
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| T |
21052867 |
aacatgtaagagactaaattgaaattaagtgatttaatataaagaccaaattgataattaattgttaaaatacaacaatataattgatattaagt-tcta |
21052965 |
T |
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| Q |
101 |
aatatagagataaacctggtagtttaatagaagcataatatatgcaaggtttgggtt |
157 |
Q |
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| T |
21052966 |
aatatagagataaacctggtagtttaatagaagcataatatatgtaaggttcgggtt |
21053022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 21053281 - 21053344
Alignment:
| Q |
181 |
ttgatgacaaaagatcaaaactttctcaaattcaataacccccattaaggtttttcttcttttc |
244 |
Q |
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| T |
21053281 |
ttgatgacaaaagatcaaaactttctcaaattcaataacccccattaaggtttttcttcttttc |
21053344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 4949101 - 4949038
Alignment:
| Q |
9 |
agagactaaattgaaattaagtgattaaatataaagaccaaattcataattaattgttaaaata |
72 |
Q |
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|||||||||||||| | |||||| ||||||||| |||| ||||| ||| | ||||||||||||| |
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| T |
4949101 |
agagactaaattgagagtaagtggttaaatatagagacgaaattaatagtaaattgttaaaata |
4949038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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