View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15242_low_1 (Length: 453)

Name: NF15242_low_1
Description: NF15242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15242_low_1
NF15242_low_1
[»] chr6 (5 HSPs)
chr6 (19-448)||(21979461-21979890)
chr6 (45-144)||(21015667-21015766)
chr6 (126-155)||(14197780-14197809)
chr6 (287-348)||(21015900-21015961)
chr6 (183-231)||(14197704-14197752)
[»] chr4 (40 HSPs)
chr4 (43-158)||(50250891-50251006)
chr4 (182-448)||(50669047-50669313)
chr4 (372-447)||(50250602-50250677)
chr4 (188-234)||(7237760-7237806)
chr4 (180-234)||(7813467-7813521)
chr4 (180-234)||(7822956-7823010)
chr4 (188-232)||(7771396-7771440)
chr4 (188-232)||(7790081-7790125)
chr4 (275-347)||(49048503-49048575)
chr4 (190-231)||(7908325-7908366)
chr4 (43-144)||(37827109-37827210)
chr4 (43-144)||(48875705-48875806)
chr4 (183-227)||(37827029-37827073)
chr4 (275-347)||(45371999-45372071)
chr4 (188-231)||(7877727-7877770)
chr4 (182-348)||(48852658-48852818)
chr4 (279-342)||(48891495-48891558)
chr4 (275-341)||(7237677-7237743)
chr4 (188-234)||(7773854-7773900)
chr4 (180-234)||(7800624-7800678)
chr4 (98-152)||(48891326-48891380)
chr4 (43-144)||(48870401-48870502)
chr4 (43-144)||(48886087-48886188)
chr4 (182-231)||(50250821-50250870)
chr4 (275-323)||(7771459-7771507)
chr4 (275-323)||(7790144-7790192)
chr4 (43-158)||(7877585-7877700)
chr4 (277-348)||(48903013-48903084)
chr4 (92-158)||(7237821-7237887)
chr4 (389-447)||(48863422-48863480)
chr4 (92-157)||(7908242-7908307)
chr4 (279-344)||(43596368-43596433)
chr4 (182-231)||(48170602-48170651)
chr4 (389-442)||(49040984-49041037)
chr4 (275-323)||(7800695-7800743)
chr4 (275-323)||(7813538-7813586)
chr4 (187-231)||(45384908-45384952)
chr4 (187-231)||(48147757-48147801)
chr4 (276-344)||(49044120-49044188)
chr4 (182-234)||(49048610-49048662)
[»] chr8 (3 HSPs)
chr8 (182-231)||(12200299-12200348)
chr8 (182-231)||(12444727-12444776)
chr8 (185-231)||(4031941-4031987)
[»] chr3 (4 HSPs)
chr3 (43-155)||(47452011-47452123)
chr3 (183-230)||(11005994-11006041)
chr3 (183-230)||(11024569-11024616)
chr3 (43-137)||(11015641-11015735)
[»] chr7 (2 HSPs)
chr7 (182-231)||(48883793-48883842)
chr7 (270-338)||(48883878-48883946)
[»] chr5 (1 HSPs)
chr5 (277-327)||(179112-179162)
[»] chr1 (3 HSPs)
chr1 (187-227)||(24310168-24310208)
chr1 (380-447)||(24367328-24367395)
chr1 (187-231)||(24367144-24367188)


Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 21979890 - 21979461
Alignment:
Q  19 tttattccctatcctcatgcttatattaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21979890 tttattccctatcctcatgcttatattaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggac 21979791  T
Q  119 ttcaaaaacaaatacctttgtctcctcttgattccaaattcataaggcatcgtgtaaatactaatctatatggttttggttatgaccagtcaagaaatga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21979790 ttcaaaaacaaatacctttgtctcctcttgattccaaattcataaggcatcgtgtaaatactaatctatatggttttggttatgaccagtcaagaaatga 21979691  T
Q  219 ttacttggtggttgtaatgggctatgacccaatcatatccaataatgtcgttttaccacatttggaggttttctctttgagagataatacctggaaacaa 318  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21979690 ttacttggtggttctaatgggctatgacccaatcatatccaataatgtcgttttaccacatttggaggttttctctttgagagataatacctggaaacaa 21979591  T
Q  319 attgagggtgctcatttcccttatatgaatcccaataatgatcattccaaacaaggggttttctttaatagggctattcattggttgacttttcggtatg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21979590 attgagggtgctcatttcccttatatgaatcccaataatgatcattccaaacaaggggttttctttaatagggctattcattggttgacttttcggtatg 21979491  T
Q  419 atttatgtgtgtttgttattgttgcctttg 448  Q
    |||||| |||||||||||||||||||||||    
T  21979490 atttatctgtgtttgttattgttgcctttg 21979461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 21015667 - 21015766
Alignment:
Q  45 taaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctcct 144  Q
    |||| ||||||||||||| ||||||||||| |||  |  |||||   ||||| ||||||| || || ||| || |||| |||||||||||||||||||||    
T  21015667 taaatgttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct 21015766  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 14197809 - 14197780
Alignment:
Q  126 acaaatacctttgtctcctcttgattccaa 155  Q
    ||||||||||||||||||||||||||||||    
T  14197809 acaaatacctttgtctcctcttgattccaa 14197780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 21015900 - 21015961
Alignment:
Q  287 ttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatatgaat 348  Q
    ||||||| |||||||||||||  |||||| ||||||||||| |||  |||||||| ||||||    
T  21015900 ttttctcgttgagagataataggtggaaagaaattgagggtactcccttcccttacatgaat 21015961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 14197752 - 14197704
Alignment:
Q  183 tctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    ||||||||| ||||| ||||||| |||||  ||||||||||||||||||    
T  14197752 tctatatggctttgggtatgacctgtcaaccaatgattacttggtggtt 14197704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 50251006 - 50250891
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || || || || ||||| | |||||||||||||||||    
T  50251006 attaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgtctc 50250907  T
Q  143 ctcttgattccaaatt 158  Q
     | |||||||||||||    
T  50250906 attttgattccaaatt 50250891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 448
Target Start/End: Original strand, 50669047 - 50669313
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggttgtaatgggctatgacccaatcatatccaataatgtcgttttaccacattt 281  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||| |||  | ||  |||||| ||||      |||   |||   ||| |||| ||||    
T  50669047 atctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaa------ccatggatgatatttcaccaaattt 50669140  T
Q  282 ggaggttttctctttgagagataatacctggaaacaaatt------gagggtgctcatttcccttatatgaatcccaataatgatcattccaaacaaggg 375  Q
     ||| |||||||  ||||||||||||| ||||||||||||      |||| | |||| ||| ||||||||| | | | ||||||||||   |||  ||||    
T  50669141 tgagtttttctcagtgagagataatacatggaaacaaattgggatggaggatactcacttcgcttatatgatttctactaatgatcatcggaaaataggg 50669240  T
Q  376 gttttctttaatagggctattcattggttgacttttcggtatgatttatgtgtgtttgttattgttgcctttg 448  Q
    ||| ||||||||  ||||||| |||||||| ||||||| |||||||||   |||||||| |||||||||||||    
T  50669241 gttctctttaatgaggctatttattggttggcttttcgttatgatttaaaggtgtttgtcattgttgcctttg 50669313  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 447
Target Start/End: Complemental strand, 50250677 - 50250602
Alignment:
Q  372 aggggttttctttaatagggctattcattggttgacttttcggtatgatttatgtgtgtttgttattgttgccttt 447  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||  || | ||||||||||||||||    
T  50250677 aggggttctctttaatggggctattcattggttggcttttcgttatgatttattggtctatgttattgttgccttt 50250602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 7237806 - 7237760
Alignment:
Q  188 atggttttggttatgaccagtcaagaaatgattacttggtggttgta 234  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggttgta 7237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 7813467 - 7813521
Alignment:
Q  180 taatctatatggttttggttatgaccagtcaagaaatgattacttggtggttgta 234  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  7813467 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgta 7813521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 7822956 - 7823010
Alignment:
Q  180 taatctatatggttttggttatgaccagtcaagaaatgattacttggtggttgta 234  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  7822956 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgta 7823010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 7771396 - 7771440
Alignment:
Q  188 atggttttggttatgaccagtcaagaaatgattacttggtggttg 232  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggttg 7771440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 7790081 - 7790125
Alignment:
Q  188 atggttttggttatgaccagtcaagaaatgattacttggtggttg 232  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggttg 7790125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 49048575 - 49048503
Alignment:
Q  275 cacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatatgaa 347  Q
    ||||||||||| ||||||| |||||||||||||  |||||| ||||||||||| ||||  |||||||||||||    
T  49048575 cacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcacatcccttatatgaa 49048503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 7908325 - 7908366
Alignment:
Q  190 ggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtt 7908366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 37827210 - 37827109
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 142  Q
    |||||||||||| ||||||| ||| ||||||| ||| ||| || ||   ||||||||||||| || || |||||| |||| ||||||||||| |||||||    
T  37827210 attaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgtctc 37827111  T
Q  143 ct 144  Q
    ||    
T  37827110 ct 37827109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 48875705 - 48875806
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 142  Q
    ||||||||||| || ||||| |||||| | || || ||||||||||| |||||| ||||||| || || || ||| |||| |||||||||||| ||||||    
T  48875705 attaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacctatgtctc 48875804  T
Q  143 ct 144  Q
    ||    
T  48875805 ct 48875806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 37827073 - 37827029
Alignment:
Q  183 tctatatggttttggttatgaccagtcaagaaatgattacttggt 227  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattacttggt 37827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 45372071 - 45371999
Alignment:
Q  275 cacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatatgaa 347  Q
    ||||||||||| ||||||| |||||||||||||| |||| | || |||||||| |||| ||||||||| ||||    
T  45372071 cacatttggagtttttctcattgagagataatacttggagagaacttgagggtactcacttcccttatttgaa 45371999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 7877727 - 7877770
Alignment:
Q  188 atggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtt 7877770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 348
Target Start/End: Original strand, 48852658 - 48852818
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggttgtaatgggctatgacccaatcatatccaataatgtcgttttaccacattt 281  Q
    |||||||||||||||| ||||||| |||||   ||||||||||||| ||| |||||  ||||||  ||| | || | |||      |||| | |||||||    
T  48852658 atctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatgatacaaccttagctaat------gtttcatcacattt 48852751  T
Q  282 ggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatatgaat 348  Q
     ||| ||||||| ||||||| |||| | |||||| ||||||||||| |||| |||||||| ||||||    
T  48852752 agagtttttctcattgagagctaatgcatggaaagaaattgagggtactcacttcccttacatgaat 48852818  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 48891495 - 48891558
Alignment:
Q  279 tttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttat 342  Q
    ||||||| ||||||| |||||||||||||  |||||| ||||||||||| || |||||||||||    
T  48891495 tttggagtttttctcattgagagataatatgtggaaagaaattgagggtacttatttcccttat 48891558  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 7237743 - 7237677
Alignment:
Q  275 cacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttccctta 341  Q
    |||||||||||||||||||||| ||||||||||  |||||| |||||||  ||  ||||||||||||    
T  7237743 cacatttggaggttttctcttttagagataatatgtggaaagaaattgattgtattcatttccctta 7237677  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 7773900 - 7773854
Alignment:
Q  188 atggttttggttatgaccagtcaagaaatgattacttggtggttgta 234  Q
    ||||||||||||||||||||  |||| ||||||||||||||||||||    
T  7773900 atggttttggttatgaccaggtaagagatgattacttggtggttgta 7773854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 7800624 - 7800678
Alignment:
Q  180 taatctatatggttttggttatgaccagtcaagaaatgattacttggtggttgta 234  Q
    |||| ||||||||||||||||||||||||||||| |||| ||| || ||||||||    
T  7800624 taatttatatggttttggttatgaccagtcaagagatgagtacgtgctggttgta 7800678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 48891326 - 48891380
Alignment:
Q  98 tatggaacccgtctactggacttcaaaaacaaatacctttgtctcctcttgattc 152  Q
    ||||||| || || ||||||||||| ||||||||||||||||||||| |||||||    
T  48891326 tatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattc 48891380  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 48870401 - 48870502
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 142  Q
    |||||||||||||||||||| |||||||| || || |||  | |||  |||||| ||||||| || || || ||| |||| |||||||||||||||| ||    
T  48870401 attaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtc 48870500  T
Q  143 ct 144  Q
    ||    
T  48870501 ct 48870502  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 48886087 - 48886188
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 142  Q
    |||||||||||||||||||| |||||||| || || |||  | |||  |||||| ||||||| || || || ||| |||| |||||||||||||||| ||    
T  48886087 attaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtc 48886186  T
Q  143 ct 144  Q
    ||    
T  48886187 ct 48886188  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 50250870 - 50250821
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    ||||||||||||||||||||||||| |||| | ||||||| |||||||||    
T  50250870 atctatatggttttggttatgaccactcaacagatgattatttggtggtt 50250821  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 7771459 - 7771507
Alignment:
Q  275 cacatttggaggttttctctttgagagataatacctggaaacaaattga 323  Q
    ||||||||||||||||||| || ||||||||||| |||||| |||||||    
T  7771459 cacatttggaggttttctcatttagagataatacgtggaaagaaattga 7771507  T

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Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 7790144 - 7790192
Alignment:
Q  275 cacatttggaggttttctctttgagagataatacctggaaacaaattga 323  Q
    ||||||||||||||||||| || ||||||||||| |||||| |||||||    
T  7790144 cacatttggaggttttctcatttagagataatacgtggaaagaaattga 7790192  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 7877585 - 7877700
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 142  Q
    |||| ||||||||| ||||| |||||| ||||  |||||  | |||   ||||||||||||| || || |||||| || |||||||||||||| ||||||    
T  7877585 attagaggttcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctc 7877684  T
Q  143 ctcttgattccaaatt 158  Q
    || ||  |||||||||    
T  7877685 cttttcgttccaaatt 7877700  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 48903013 - 48903084
Alignment:
Q  277 catttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatatgaat 348  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| || |||||  |||| |||||||||| ||||    
T  48903013 catttagagattttctcattgagagataatacatggaaacagatggagggaactcacttcccttatacgaat 48903084  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 7237887 - 7237821
Alignment:
Q  92 tctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctcctcttgattccaaatt 158  Q
    ||||| ||||||| || || |||||| || |||||||||||||  |||||||| |||||||||||||    
T  7237887 tctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttgattccaaatt 7237821  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 48863422 - 48863480
Alignment:
Q  389 gggctattcattggttgacttttcggtatgatttatgtgtgtttgttattgttgccttt 447  Q
    ||||||||||||||||| |||||||  ||||| || |||| | ||||||||||||||||    
T  48863422 gggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgccttt 48863480  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 7908242 - 7908307
Alignment:
Q  92 tctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctcctcttgattccaaat 157  Q
    ||||||||||||| || ||||||||| || ||||||| ||||   |||||||| ||||||||||||    
T  7908242 tctacatatggaatccatctactggatttaaaaaacatatacacctgtctcctgttgattccaaat 7908307  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 43596433 - 43596368
Alignment:
Q  279 tttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatat 344  Q
    ||||||| ||||||| ||||||||||||| | ||||| || || ||||| || |||||||||||||    
T  43596433 tttggagcttttctcattgagagataataaccggaaagaacttaagggtactaatttcccttatat 43596368  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 48170651 - 48170602
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    |||||||||||||||| ||||| |||| |||| |||||||||| ||||||    
T  48170651 atctatatggttttgggtatgatcagttaagagatgattacttagtggtt 48170602  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 49041037 - 49040984
Alignment:
Q  389 gggctattcattggttgacttttcggtatgatttatgtgtgtttgttattgttg 442  Q
    ||||||||||||||||| |||||||  ||||| ||||||| | |||||||||||    
T  49041037 gggctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttg 49040984  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 7800695 - 7800743
Alignment:
Q  275 cacatttggaggttttctctttgagagataatacctggaaacaaattga 323  Q
    ||||||||||||||||||| ||   |||||||||||||||| |||||||    
T  7800695 cacatttggaggttttctcgtttccagataatacctggaaagaaattga 7800743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 7813538 - 7813586
Alignment:
Q  275 cacatttggaggttttctctttgagagataatacctggaaacaaattga 323  Q
    ||||||||||||||||||| ||   |||||||||||||||| |||||||    
T  7813538 cacatttggaggttttctcctttccagataatacctggaaagaaattga 7813586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 45384952 - 45384908
Alignment:
Q  187 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    ||||||||||| ||||| ||||||| ||||||||| |||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtt 45384908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 48147801 - 48147757
Alignment:
Q  187 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    ||||||||||| |||||||||| || | |||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtt 48147757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 49044188 - 49044120
Alignment:
Q  276 acatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttcccttatat 344  Q
    |||||||||| ||||||| |||||||||||||  |||||  ||||||||| | || | |||||||||||    
T  49044188 acatttggagtttttctcattgagagataatagatggaatgaaattgaggttactaacttcccttatat 49044120  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 49048662 - 49048610
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggttgta 234  Q
    |||||||||||||||| |||||||  |||| | ||||||| ||||||||||||    
T  49048662 atctatatggttttgggtatgacccatcaacagatgattatttggtggttgta 49048610  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 12200299 - 12200348
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggtt 12200348  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 12444727 - 12444776
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggtt 12444776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 4031987 - 4031941
Alignment:
Q  185 tatatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    ||||||||||||| ||||||||||||| |||||| ||| ||||||||    
T  4031987 tatatggttttgggtatgaccagtcaacaaatgactacctggtggtt 4031941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 47452123 - 47452011
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc 142  Q
    |||||||||||||||||||| |||||| ||||    |||| |||||   ||||||||||||| || || |||||| |||| ||||||||||||||| |||    
T  47452123 attaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttgcctc 47452024  T
Q  143 ctcttgattccaa 155  Q
    || ||| ||||||    
T  47452023 cttttggttccaa 47452011  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 11006041 - 11005994
Alignment:
Q  183 tctatatggttttggttatgaccagtcaagaaatgattacttggtggt 230  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11005994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 11024616 - 11024569
Alignment:
Q  183 tctatatggttttggttatgaccagtcaagaaatgattacttggtggt 230  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 11015735 - 11015641
Alignment:
Q  43 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaataccttt 137  Q
    |||||| |||||||||||||||||||| ||||    |||| |||||   ||||| ||||||| || || ||||||| ||| ||||||||||||||    
T  11015735 attaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 48883793 - 48883842
Alignment:
Q  182 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  48883793 atctatatggttttggttatgacccgtcaagagatgattacatggtggtt 48883842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 48883878 - 48883946
Alignment:
Q  270 tttaccacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctcatttccc 338  Q
    |||| |||||||||||  |||||| |||||||||||||  |||||| ||||||||| |||||| |||||    
T  48883878 tttatcacatttggagtgtttctcattgagagataatatgtggaaagaaattgaggatgctcacttccc 48883946  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 179112 - 179162
Alignment:
Q  277 catttggaggttttctctttgagagataatacctggaaacaaattgagggt 327  Q
    ||||||||| ||||||| |||||||||||||| |||||| |||||||||||    
T  179112 catttggagattttctcattgagagataatacatggaaagaaattgagggt 179162  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 24310168 - 24310208
Alignment:
Q  187 tatggttttggttatgaccagtcaagaaatgattacttggt 227  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggt 24310208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 447
Target Start/End: Original strand, 24367328 - 24367395
Alignment:
Q  380 tctttaatagggctattcattggttgacttttcggtatgatttatgtgtgtttgttattgttgccttt 447  Q
    ||||| || |||||||||| |||||||||||||| |||||| || ||||   ||||||||||||||||    
T  24367328 tctttcatggggctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgccttt 24367395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 24367144 - 24367188
Alignment:
Q  187 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 231  Q
    ||||||||||| |||||| |||||| | |||||||||||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtt 24367188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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