View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15242_low_2 (Length: 423)
Name: NF15242_low_2
Description: NF15242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15242_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 42 - 418
Target Start/End: Original strand, 40255272 - 40255649
Alignment:
| Q |
42 |
gttctggttctggtttattggtgaagaatgaaccaatgtcgtatatggaatcaaatgggatcaaaaatcatacaatagcaggaaaaaagagaaagttttt |
141 |
Q |
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| T |
40255272 |
gttctggttctggtttattagtgaagaatgaaccaatgtcgtatatggaatcaaatgggatccaaaatcatacaatagcaggaaaaaagagaaagttttt |
40255371 |
T |
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| Q |
142 |
ataaggctgctcaaagnnnnnnn-atttgaattaaatgtgagatgaagatatatagccaactttatgtgtagatttagcatctctaggttgcaattgcat |
240 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40255372 |
ataaggctgctcaaagttttttttatttgaattaaatgtgagatgaagatatatagccaactttatgtgtagatttagcatctctaggttgcaattgcat |
40255471 |
T |
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| Q |
241 |
tgcctttttatattgtgtatctattcccttattattttgttcttttttatccatcaaatatttgaattgaatactgaagaagaaaaacaatggtaaactt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40255472 |
tgcctttttatattgtgtatctattcccttattattttgttcttttttatccatcaaatatttgaattgaatactgaagaagaaaaacaatggtaaactt |
40255571 |
T |
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| Q |
341 |
ggcatactttttgtagtcacgtatgcagtttttcattatttatgatgatttgaagctagatgttactcttcatctctc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40255572 |
ggcatactttttgtagtcacgtatgcagtttttcattatttatgatgatttgaagctagatgttactcttcatatctc |
40255649 |
T |
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