View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15242_low_3 (Length: 421)
Name: NF15242_low_3
Description: NF15242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15242_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 71 - 352
Target Start/End: Complemental strand, 14185252 - 14184970
Alignment:
| Q |
71 |
tgtattgaacataatgttcatgaaccttcgtactggtgagagaaacatagcgattacgaccagaaaacaacctcacgtaaacatcttcaagtgccgaagt |
170 |
Q |
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| T |
14185252 |
tgtattgaacataatgttcatgaacattagtactggtgagagaaacatagcgattacgaccagaaaacagcctcacgtaaacatcttcaagtgccgaagt |
14185153 |
T |
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| Q |
171 |
cagtagagaggatgtaaaaacatcgtcatatgacattccaacatcacctacctcaatcaat-cgttaggaaatcgatacaacaaatcaacatgcttacag |
269 |
Q |
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| T |
14185152 |
cagtagagaggatgtaaaaacatcgtcatctgacattccaacatcacctacctcgatcaatccgttaggaaatcgatacaacaaatcagcatgcttacgg |
14185053 |
T |
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| Q |
270 |
aaaataaactccatggattccgtcctatcttcatgtgggagttcgttgaacagatctaattattctcatcgtcaagataaatt |
352 |
Q |
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| T |
14185052 |
aaaataaactccatggattccgtcctatcttcatgtgggagttcgttgaacagatctaattattctcatcgtcaagataaatt |
14184970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 14182910 - 14182608
Alignment:
| Q |
20 |
gacgagacgtgtatataactgacgctctaccgaaagtcacagcctgaagaatgtattgaacataatgttcatgaaccttcgtactggtgagagaaacata |
119 |
Q |
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| T |
14182910 |
gacgagacgtgtatataactgacgctctaccgaaagtcacagcctagagaatgtattgaacataatgttcatgaaccttcgtgctggtgagagaaacata |
14182811 |
T |
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| Q |
120 |
gcgattacgaccagaaaacaacctcacgtaaacatcttcaagtgccgaagtcagtagagaggatgtaaaaacatcgtcatatgacattccaacatcacct |
219 |
Q |
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| T |
14182810 |
gcga------ccagaaaacaacctcacgtaaacatcttcaagtgccgaagtcagtagagaggatgtaaaaacatcatcatctgacattccaacatcacct |
14182717 |
T |
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| Q |
220 |
acctcaatcaat-cgttaggaaatcgatacaacaaatcaacatgcttacagaaaataaactccatggattccgtcctatcttcatgtgggagttcgttga |
318 |
Q |
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| T |
14182716 |
acctcgatcaatccgttaggaaatcgatacaacaaatcagcatgcttatggaaaataaactccattgattccgtcctatcttcatgtgggagttcgttga |
14182617 |
T |
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| Q |
319 |
acagatcta |
327 |
Q |
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| T |
14182616 |
acagatcta |
14182608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 14179060 - 14178761
Alignment:
| Q |
20 |
gacgagacgtgtatataactgacgctctaccgaaagtcacagcctgaagaatgtattgaacataatgttcatgaaccttcgtactggtgagagaaacata |
119 |
Q |
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| T |
14179060 |
gacgagacatgtatataactgacgctctaccgaaagtcgcagcctggagaatgtattaaacataatgtacatgaaccttcgtactggtgagagaaacata |
14178961 |
T |
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| Q |
120 |
gcgattacgaccagaaaacaacctcacgtaaacatcttcaagtgccgaagtcagtagagaggatgtaaaaacatcgtcatatgacattccaacatcacct |
219 |
Q |
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| T |
14178960 |
gcgaa------cagaaaacaacctcacgtaaacatcttcaagtgccaaagtcagtagagaggatgtaaaaatatcgtcatctgacattccaacatcacct |
14178867 |
T |
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| Q |
220 |
acctcaatcaat-cgttaggaaatcgatacaacaaatcaacatgcttacagaaaataaactccatggattccgtcctatcttcatgtgggagttcgttga |
318 |
Q |
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| T |
14178866 |
acctcgatcaatccgttaggaaatcgatacaacaaatcatcatgcttatggataataaactccattgattccgtcctatcttcatgtgggagttcgttga |
14178767 |
T |
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