View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15243_low_1 (Length: 485)
Name: NF15243_low_1
Description: NF15243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15243_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 6 - 475
Target Start/End: Original strand, 46754083 - 46754560
Alignment:
| Q |
6 |
aggagcagagaattaatgataagcatatgatgatgaggtatatgacatacagaaggatatgagaaagtatggtcacaaagtattctctttatgaaaaagg |
105 |
Q |
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| T |
46754083 |
aggaccagagtattaatgataagcatatgatgatgaggtatatgacatacagaaggatatgagaaagtatggtcataaagtattctctttatgaaaaagg |
46754182 |
T |
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| Q |
106 |
accaccagctgcaaagtgctatcgctgtttgtactatgagtccaactagaacaaaatcccatttatttcatacgcaag-------tgcatgtgtttatct |
198 |
Q |
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| T |
46754183 |
accaccggctgcaaagtgctatcgctgtttgtactatgagtccaactagaacaaaatcccatttatttcgtacgcaagacgcaagtgcatgtgtttatct |
46754282 |
T |
|
| Q |
199 |
ttgaccataatccactaaagtggatgacacttcttacttatggtatactatctgtatatgaaagaataagctccgcaagttcactgata-actacacata |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
46754283 |
ttgaccataatccactaaagtggatgacacttcttacttatggtgtactatctgtatatgagagaataagctccgcaagttcactgatatactacacata |
46754382 |
T |
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| Q |
298 |
aaaccttcgtgatatgtctaaacatatttttggtaaagagatttataatatgttatattgagggagtataatgtgtctactgtctaccgtactcggttta |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46754383 |
aaaccttcgtgatatgtctaaacatatttttggtaaagagatttataatttgttatattgaggaagtataatgtgtctactgtctaccgtactcggttta |
46754482 |
T |
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| Q |
398 |
tactttaaattttattgctcacttagagaagtttaataaacatccccatgagtttaactcaattggcagtgatatttg |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
46754483 |
tactttaaattttattgctcacttagagaagtttaataaacattcccgtgaacttaactcaattggcagtgatatttg |
46754560 |
T |
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