View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15244_low_1 (Length: 620)
Name: NF15244_low_1
Description: NF15244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15244_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 609
Target Start/End: Original strand, 15402998 - 15403587
Alignment:
| Q |
17 |
ataactcttgttgagttttgctttaggtttgagtttgaccaagtttctgtgtgatcttcaacatattattattcagaaaaggtaaacttttcttcatcta |
116 |
Q |
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| T |
15402998 |
ataactcttgttgaattttgctttaggtttgagtttgaccaagtttctgtgtgatcttcaacatatt---attcagaaaaggtaaacttttcttcatcta |
15403094 |
T |
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| Q |
117 |
actcacaaaattcaaaatgctgaaggttcaacatggttttgtcaaagaaggtgggtagggcgagggggatagaatttaatcatgttgaatactatgagca |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
15403095 |
actcagaaaattcaaaatgctgaaggttcaacatggttttgtcaaagaaggtgggtgggacgagggggatagaatttaatcatgttgaatactatgagca |
15403194 |
T |
|
| Q |
217 |
atgtgtgaatataaagttgaaacttgaaggccaagcatttaattcacagatattaaactaagaacattctcatatacttatatcataattctgtggccaa |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15403195 |
atgtgtgaatctaaagttgaaacttgaaggccaagcatttaattcacagatattaaactaagaacattctcatatacttatatcataattttgtggccaa |
15403294 |
T |
|
| Q |
317 |
tattcttacaaccaaaggaacttctgtttagtaatgtttgtggcctacattattttcataaaagaaatcaagtaacataaataattaagaagaatatcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15403295 |
tattcttacaaccaaaggaacttctgtttagtaatgtttgtggcctacattattttcataaaagaaatcaagtaacataaataattaagaagaatatcat |
15403394 |
T |
|
| Q |
417 |
aaatgtttattgataagtcacaatacggtcccaattgcatgtgccattattttataattggaccttccttttgcctttcaaggatttattacaaatttga |
516 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15403395 |
aaatgtttattgataagtcacaatacggtccctattgcatgtgccattattttataattggaccttccttttgcctttcaaggatttattacaaatttga |
15403494 |
T |
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| Q |
517 |
cttgtggaccttagttgaaagaatgcaatttaataccaaatttccttaatgattgcaaaaaatatcctagttaggcttaccaggtttgtctgt |
609 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15403495 |
cttgtggcccttagttgaaagaatgcaatttaataccaaatttccttaatgattgcaaaaaatatcctagttaggcttaccaggtttgtctgt |
15403587 |
T |
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