View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15244_low_3 (Length: 256)
Name: NF15244_low_3
Description: NF15244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15244_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 17983900 - 17983677
Alignment:
| Q |
29 |
tccgaatgaaagttcaaaacatactgcaatttcatggtttaaagttgtactcatttatctcacttcatatttggtcnnnnnnnntattttatatat--ga |
126 |
Q |
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| T |
17983900 |
tccgaatgaaagttcaaaacatactgcaatttcatggtttaaagttgtactcatttatctcacttcatatttggtcaaaaaaaatattttatatatatga |
17983801 |
T |
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| Q |
127 |
gcaatttataagtaaatagtaaactaatatttaaataacaaataattcgctgcaagcatttttcttgaaggatcgaagctacaaatctggaaaacacgat |
226 |
Q |
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| T |
17983800 |
gcaatttataagtaaatagtaaactaatatttaaataacaaataattcgctgcaagcatttttcttgaaggatctaagctacaaatctggaaaacatgat |
17983701 |
T |
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| Q |
227 |
actcgatagataattctgatgatg |
250 |
Q |
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| T |
17983700 |
actggatagataattcttatgatg |
17983677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 17987152 - 17987030
Alignment:
| Q |
117 |
ttatatatgagcaatttataagtaaata-----gtaaactaatatttaaataacaaataattcgctgcaagcatttttcttgaaggatcgaagctacaaa |
211 |
Q |
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| T |
17987152 |
ttatatatgagcaatt-ataagtaaaaaaactggtaagctaatatttaaataacaaataattcgctgcaagcatttttcttgaaggatcgaagctacaaa |
17987054 |
T |
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| Q |
212 |
tctggaaaacacgatactcgatag |
235 |
Q |
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| T |
17987053 |
tttggaaaacatgatactggatag |
17987030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 17976122 - 17976043
Alignment:
| Q |
118 |
tatatatgagcaatttataagtaaatagtaaactaatatttaaataacaaataattcgctgcaagcatttttcttgaagga |
198 |
Q |
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| T |
17976122 |
tatatatgagcaatt-ataagtaaatattaaactaatatttaaataacatataattcgctgcaagcatttttcttgaagga |
17976043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 17987218 - 17987177
Alignment:
| Q |
25 |
catgtccgaatgaaagttcaaaacatactgcaatttcatggttt |
68 |
Q |
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| T |
17987218 |
catgtccgaatgaaagttcaaaagatactgc--tttcatggttt |
17987177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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