View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15245_high_1 (Length: 480)
Name: NF15245_high_1
Description: NF15245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15245_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 3480417 - 3480865
Alignment:
| Q |
18 |
tattctaaagaaatttcactacaaattttatgctgcttttggtttaatttaaaatcacaatgcaattcaatcacaaccttgcaacaaaacctccaacaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3480417 |
tattctaaagaaatttcactacaaattttatgctgcttttggtttaacttaaaatcacaatgcaattcaatcacaaccttgcaacaagacctccaacaag |
3480516 |
T |
|
| Q |
118 |
aatcattacctcctcttgtaaacttggaaaatgattatagataaagcgataccgcaactctttgtcctggaattgataacgatagcaaacacaaatttag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
3480517 |
aatcattacctcctcttgtaaacttggaaaatgattatagataaagcgataccgcaactctttgtcctggaattcataacgatggcaaacacaaatttag |
3480616 |
T |
|
| Q |
218 |
cattcaaaacgatgaatcaactaaaattacaataaatgagatataatgtaaccattgcacataacataaatttgatataagttgaaaagataacaagtca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3480617 |
cattcaaaacgatgaatcaactaaaattacaataaatgagatataatgtaaccattgcacataacataaatttgatataagttgaaaagataacaagtca |
3480716 |
T |
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| Q |
318 |
tttagcacttaaacaaataacaacagaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3480717 |
tttagcacttaaacaaataacaacagaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatg |
3480816 |
T |
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| Q |
418 |
taagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
466 |
Q |
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| T |
3480817 |
taagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
3480865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 342 - 466
Target Start/End: Original strand, 3456354 - 3456478
Alignment:
| Q |
342 |
agaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
441 |
Q |
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|||||||| |||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456354 |
agaagaaataaacacaatactcactgtaatatacctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
3456453 |
T |
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| Q |
442 |
aatctgtgacagttcctccacaggt |
466 |
Q |
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| T |
3456454 |
aatctgtgacagttcctccacaggt |
3456478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 3455838 - 3455983
Alignment:
| Q |
40 |
aaattttatgctgcttttggtttaatttaaaatcacaatgcaattcaatcacaaccttgcaacaaaacctccaacaagaatcattacctcctcttgtaaa |
139 |
Q |
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|||||||||||||||||||||||||| |||||| | || | || || | ||||||||||||| | || ||| | |||||||||||| ||||||||| |
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| T |
3455838 |
aaattttatgctgcttttggtttaatataaaattataaag---ttgcat-ataaccttgcaacaagagcttcaaaagaaatcattacctcttcttgtaaa |
3455933 |
T |
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| Q |
140 |
cttggaaaatgattatagataaagcgataccgcaactctttgtcctggaa |
189 |
Q |
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| T |
3455934 |
cttggaaaatgattatagataaaacgatagcgcaactctttgtcctggaa |
3455983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 3456210 - 3456292
Alignment:
| Q |
202 |
gcaaacacaaatttagcattcaaaacgatgaatcaactaaaattacaataaatgagatataatgtaaccattgcacataacat |
284 |
Q |
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||||| ||||||||||||| ||||| |||||||||||||||| | |||| | || ||||||| |||||||| |||||||||| |
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| T |
3456210 |
gcaaaaacaaatttagcatccaaaatgatgaatcaactaaaacttaaatagaagatatataatttaaccattacacataacat |
3456292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 48694426 - 48694335
Alignment:
| Q |
375 |
cctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
466 |
Q |
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|||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || || ||||| || |||||| |
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| T |
48694426 |
cctgatggccaataacaacaggagcattttggagtataaaatgcaagaaattatctgctctcttcagaatttgagagagttcttcaacaggt |
48694335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 48694487 - 48694423
Alignment:
| Q |
122 |
attacctcctcttgtaaacttggaaaatgattatagataaagcgataccgcaactctttgtcctg |
186 |
Q |
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||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||||||| |
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| T |
48694487 |
attacctcctcatgcaaacttggaaagtggttgtagataaagcgataccgcaactctttgtcctg |
48694423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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