View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15245_high_3 (Length: 353)
Name: NF15245_high_3
Description: NF15245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15245_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 13071206 - 13070900
Alignment:
| Q |
6 |
aataagaacattgatcaacactgaacataaattgcgagaatctgatgaaaaaggaaaattggaataatgaaggcaaatggtacatacacaaaataagttc |
105 |
Q |
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| T |
13071206 |
aataagaacattgatcaacactgaacataaattgcgagaatctgatgaaaaaggaaaattggaataatgaaggcaaatggtacatacacaaaataaggtc |
13071107 |
T |
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| Q |
106 |
cggtatgtcacacctcacattgatgaggaagtggtgatggggaaagagagatgaagaaaaatgttcatggttgaaggttatcaaacaaaaacacatggat |
205 |
Q |
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| T |
13071106 |
cggtatgtcacacctcacattgatgaggaagtggtgatggggaaagagagatgaagaaaaatgttcatggttgaaggttatcaaacaaaaacacatggat |
13071007 |
T |
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| Q |
206 |
gaatttgaaggaaatatatgtggggtattgaaaagtggatatagatgtagttccataaattgattttctagtgggacgattaaacaggtgggagggaaac |
305 |
Q |
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| T |
13071006 |
gaatttgaaggaaatatatgtggggtattgaaaagtggatatagatgtagttccataaattgattttctagtgggacgattaaacaggtgggagggaaac |
13070907 |
T |
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| Q |
306 |
ataatat |
312 |
Q |
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| T |
13070906 |
ataatat |
13070900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 13080842 - 13080745
Alignment:
| Q |
7 |
ataagaacattgatcaacactgaacataaattgcgagaatctgatgaaaaaggaaaattggaata----atgaaggcaaatggtacatacacaaaata |
100 |
Q |
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| T |
13080842 |
ataacaacattgatggaaactgagcataaattgagagaatcagatgaaataggaaaatgggaatagaaaatgaaggccaatggtacatatacaaaata |
13080745 |
T |
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