View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15245_high_9 (Length: 251)
Name: NF15245_high_9
Description: NF15245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15245_high_9 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 27384644 - 27384449
Alignment:
| Q |
56 |
tttctaatttgaaaagcacgcatattcaacacacgtttacttgatcgtgaaagtgtttaaaggcaacccgcttccattgaaggggtgtctgatcaacgtc |
155 |
Q |
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| T |
27384644 |
tttctaattagaaaagcatgcatattcgacacatatttacttgatcgtgaaagtgtttaaaggtaacccacttttattgaaggggtgtctgatcaacgtc |
27384545 |
T |
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| Q |
156 |
catcacctttatcctgtcaagtgtcaacgaccactcaagccaaagatgttagctttgaaaagaattaatctttagattattctcaataagtagcca |
251 |
Q |
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| T |
27384544 |
catcacctttatcctgtcaagtgtcaacgaccactcaagccgaagatgttagctttgaaaagaattaatcttcatattattctcaataagtagcca |
27384449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 27391034 - 27390954
Alignment:
| Q |
148 |
tcaacgtccatcacctttatcctgtcaagtgtcaacgaccactcaagccaaagatgttagctttgaaaagaattaatctttagattatt |
236 |
Q |
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| T |
27391034 |
tcaacgtccatcacctttatcctgtcaact-------accactcaagccgaagatgttagc-ttgaaaagaattaatcttcagattatt |
27390954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 27391128 - 27391071
Alignment:
| Q |
56 |
tttctaatttgaaaagcacgcatattcaacacacgtttacttgatcgtgaaagtgttt |
113 |
Q |
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| T |
27391128 |
tttctaacttaaaaagctcgcatattcggcacacgtttacttgatcgtcatagtgttt |
27391071 |
T |
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