View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15245_low_12 (Length: 231)
Name: NF15245_low_12
Description: NF15245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15245_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 39304724 - 39304863
Alignment:
| Q |
84 |
ttctgttttttatatgaattgaaaa-tgttttgattggtgttcatatccttcattgtgtttaatattgatcttcatgcaatgatatagttatgtttatga |
182 |
Q |
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| T |
39304724 |
ttctgttttttatatgaattgaaaaatgttttgattggtgtccatatccttcattgtgtttaatattgatcttcatggaatgatatagttatgtttatga |
39304823 |
T |
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| Q |
183 |
gaacgttgtaaacattttgacgtccttaagcttgatgatg |
222 |
Q |
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| T |
39304824 |
gaacgttgtaaacattttgacgtccttaagcttgatgatg |
39304863 |
T |
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Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 39304547 - 39304633
Alignment:
| Q |
1 |
cattgatctatttcctccttaacaatgaacgagcaagatcaagtgggacaccgtattcttaacaaatgagatgaaccatagccttct |
87 |
Q |
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| T |
39304547 |
cattgatctatttcctccttaacaatgaacgagcaagatcaagtgggacaccgtattcttaacaaatgagatgaaccatagccttct |
39304633 |
T |
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