View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15245_low_3 (Length: 434)
Name: NF15245_low_3
Description: NF15245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15245_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 42215459 - 42215864
Alignment:
| Q |
19 |
aatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatataggtaactgcacaagtctctacagattgaggttaaatcaga |
118 |
Q |
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| T |
42215459 |
aatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatataggtaactgcacaagtctctacagattgaggttaaatcaga |
42215558 |
T |
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| Q |
119 |
atagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttggacttgcactacaatcatcttgtaggggagattccatctca |
218 |
Q |
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| T |
42215559 |
atagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttggacttgcactacaatcatcttgtaggggagattccatctca |
42215658 |
T |
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| Q |
219 |
gttctctggtcttagcaaacttggagtgcttgatctctcccacaacaagctctcagggaatttagatgctctttctaaccttcataatcttgtttcttta |
318 |
Q |
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| T |
42215659 |
gttctctggtcttagcaaacttggagtgcttgatctctcccacaacaagctctcagggaatttagatgctatttctaaccttcataatcttgtttcttta |
42215758 |
T |
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| Q |
319 |
aatgtttccttcaatgaattctctggtgaattgcctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaaggtcttcacattc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215759 |
aatgtttccttcaatgaattctctggtgaattgcctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaaggtcttcacattc |
42215858 |
T |
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| Q |
419 |
ctgatg |
424 |
Q |
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| T |
42215859 |
ctgatg |
42215864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 208 - 417
Target Start/End: Original strand, 24157426 - 24157635
Alignment:
| Q |
208 |
attccatctcagttctctggtcttagcaaacttggagtgcttgatctctcccacaacaagctctcagggaatttagatgctctttctaaccttcataatc |
307 |
Q |
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|||||||| || |||||| ||||||||||||| | |||||||||||||| || ||||| |||||||||||||||||| |||| ||| ||||||| |||| |
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| T |
24157426 |
attccatcacaattctctagtcttagcaaactaagtgtgcttgatctctcacataacaaactctcagggaatttagatcctctatctgaccttcaaaatc |
24157525 |
T |
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| Q |
308 |
ttgtttctttaaatgtttccttcaatgaattctctggtgaattgcctaactcaccattctttaggaaactccctttcagtgatctcactggaaataaagg |
407 |
Q |
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||||||| ||||||||||||||||||| ||||||||| | || |||||| |||||||||| || |||||| |||||||||| | | |||| |||| |
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| T |
24157526 |
ttgtttccttaaatgtttccttcaatgccttctctggtaagttacctaacacaccattcttccataatctccctctcagtgatcttgccgaaaatgaagg |
24157625 |
T |
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| Q |
408 |
tcttcacatt |
417 |
Q |
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|||| ||||| |
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| T |
24157626 |
tctttacatt |
24157635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 24156896 - 24156952
Alignment:
| Q |
35 |
tgcttatttccaatgatttggaaggattaataccacctgatataggtaactgcacaa |
91 |
Q |
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| T |
24156896 |
tgcttatttccaatgatttgtcaggctttataccacctgatataggaaactgcacaa |
24156952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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