View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15245_low_4 (Length: 417)
Name: NF15245_low_4
Description: NF15245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15245_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 55244457 - 55244296
Alignment:
| Q |
17 |
aacatgtgccttgtctatattttcaacgatttctattgaattctatattaacattgcggtaactcaacatgattgttacaatttctgtcaatttcaaata |
116 |
Q |
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| T |
55244457 |
aacatgtgccttctctatattttcaacgatttctattgaatactatattaacattgcggtaactcaacatgattgttacaatttctgtcaatttcaaata |
55244358 |
T |
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| Q |
117 |
agggacatacttacaagcaaagttgtggggaggcatttgccccgactgtattttcaacgatt |
178 |
Q |
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| T |
55244357 |
agggacatacttacaagcaaagttgtggggaggcatttgcaccgactgtattttcaacgatt |
55244296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 274 - 411
Target Start/End: Complemental strand, 55243728 - 55243591
Alignment:
| Q |
274 |
aagaagaaagattgacatcaacaaattaacccacaattataataaaaaactgtacaaaaactaaattctcgatccgaaacataannnnnnnnnnnnnnnn |
373 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55243728 |
aagaagaaagattgacatcagcaaattaacccacaattataataataaactgtacaaaaactaaattctcgatccgaaacataatttttatttttatttt |
55243629 |
T |
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| Q |
374 |
ataaatgtatcctttgacaaatcatttttagaattatc |
411 |
Q |
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| T |
55243628 |
ataaatgtatcctttgacaaatcatttttagaattatc |
55243591 |
T |
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