View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15245_low_6 (Length: 329)
Name: NF15245_low_6
Description: NF15245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15245_low_6 |
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| [»] scaffold0522 (1 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 11312538 - 11312785
Alignment:
| Q |
5 |
atggacatcatctcctataaataaagaactctcatgatcactttttcacaacatcccccaacaccaacatcatttccannnnnnnnnnnnnnnnttcaag |
104 |
Q |
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| T |
11312538 |
atggacatcaactcctataaataaagaaccctcataatcactttttcacaacatcccccaacaccaacatcatttccactctctctctctctctttcaag |
11312637 |
T |
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| Q |
105 |
gttacatcgtcttacatagaaaaatgggaaattttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaac |
204 |
Q |
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| T |
11312638 |
gttacatcgtcttacatagaaaaatgggaaattttttagcattgttgatgctcatactccaactaacctttttcactccatttgctgaagagtttgaaac |
11312737 |
T |
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| Q |
205 |
aactcttcaagaacttgatgcttttaagccttcggttcctgttaagcc |
252 |
Q |
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| T |
11312738 |
aactcttcaagaacttgatgcttttaagccttcggttcctgttaagcc |
11312785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 11312805 - 11312873
Alignment:
| Q |
242 |
cctgttaagccccttaagcctcctatccctgttacccctcctacgcctattaagcctcctgcccctcgt |
310 |
Q |
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| T |
11312805 |
cctgttaagccccttaagcctcctatccctgttacccctcctacgcctattaagcctcctgcccctcgt |
11312873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 11312913 - 11312963
Alignment:
| Q |
260 |
cctcctatccctgttacccctcctacgcctattaagcctcctgcccctcgt |
310 |
Q |
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| T |
11312913 |
cctcctatccctgttacccctcctacgcctattaagcctcctgcccctcgt |
11312963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 21471492 - 21471585
Alignment:
| Q |
138 |
ttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
231 |
Q |
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| T |
21471492 |
tttttgcactgttgctacttttactccaactaccatttttcacttcatttgctgaagagtttgaaacagctctttacgaacttgatggttttaa |
21471585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 1192 - 1108
Alignment:
| Q |
147 |
tgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
231 |
Q |
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| T |
1192 |
tgttgctactcttactccaactagcatttttcacttcatttgctgaagagtttgacacagctctttacgaacttgatggttttaa |
1108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 3826 - 3919
Alignment:
| Q |
138 |
ttttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaa |
231 |
Q |
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| T |
3826 |
tttttgcactgttgctactcctactccaactagcatttttcacttcatttactgaagagtttgatacagctctttacgaacttgatggttttaa |
3919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 19262847 - 19262750
Alignment:
| Q |
140 |
ttagcattgttgatactcatactccaactaacctttttcactccatttgctgaagagtttgaaacaactcttcaagaacttgatgcttttaagccttc |
237 |
Q |
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| T |
19262847 |
ttagcattgttgttactcttacttcaactaacctttttcactacatttgcggaagagcttgaaaccgctctttacaaaccttatggttttaagccttc |
19262750 |
T |
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