View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15246_high_1 (Length: 301)
Name: NF15246_high_1
Description: NF15246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15246_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41308687 - 41308908
Alignment:
| Q |
1 |
atactacaagtaattatatatcacaagaacaa-tcaacatnnnnnnntaaatgctaagatgctaaacactcgtataattttgaacggacaaggactttct |
99 |
Q |
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| T |
41308687 |
atactacaagtaattatatatcacaagaacaaatcaacataaaaaaataaatgctaagatgctaaacactcgtataattttgaacggacaaggactttct |
41308786 |
T |
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| Q |
100 |
atcttttttgaaggaaaaagtagagtgattttagacaaaattaagataaactataagagatgatgatgttaaaaacggtttgaatctttctcctatcttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41308787 |
atcttttttgaaggaaaaagtagagtgattttagacaaaattaagataaactataagagatgatgatgttaaaaacggtttgaatctttctcctatcttc |
41308886 |
T |
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| Q |
200 |
taattatcaaatattatttctt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
41308887 |
taattatcaaatattatttctt |
41308908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 41308903 - 41308941
Alignment:
| Q |
263 |
tttcttttaattctaaaagtgagattttggataggatta |
301 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
41308903 |
tttcttgtaattctaaaagtgagattttggataggatta |
41308941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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