View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_high_1 (Length: 697)
Name: NF15247_high_1
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 402 - 646
Target Start/End: Original strand, 24384997 - 24385240
Alignment:
| Q |
402 |
aaggccgatttag-aagagagttggcaaagagcctcaacttgaggggtagtccttggacctagcttccccacactggaccgagaaccgagctatatgctc |
500 |
Q |
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| T |
24384997 |
aaggctgatttagtaagagagttggcaaagagcctcaacttgagg--tagtccttggacctagcttccccacactggaccgagaaccgagctatatgctc |
24385094 |
T |
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| Q |
501 |
aatagtcgacttcttctcctagaatagaacaaactcaggcaccttatacccccttggaaactgatgaactcggtcgatccaatcagcgtatggtttccta |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24385095 |
aatagtcgacttcttctcctagaatagaacaaactcaggcaccttatacccccttggaaactgatgaactcggtcgatccaatcagggtatggtttccta |
24385194 |
T |
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| Q |
601 |
gacgtcggcctcattaagggcctgacgtcaattccaagctgttgta |
646 |
Q |
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| T |
24385195 |
gacgtcggcctcattaagggcctgacgtcaattccaagctgctgta |
24385240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 402 - 640
Target Start/End: Original strand, 24380664 - 24380901
Alignment:
| Q |
402 |
aaggccgatttag-aagagagttggcaaagagcctcaacttgaggggtagtccttggacctagcttccccacactggaccgagaaccgagctatatgctc |
500 |
Q |
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| T |
24380664 |
aaggctgatttagtaagagagttggcaaagagcctcaacttgagg--tagtccttggacctagcttcctcacactggaccgagaaccgagctatatgctc |
24380761 |
T |
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| Q |
501 |
aatagtcgacttcttctcctagaatagaacaaactcaggcaccttatacccccttggaaactgatgaactcggtcgatccaatcagcgtatggtttccta |
600 |
Q |
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| T |
24380762 |
aatagtcgacttcttctcctagaatagaacaaactcaggcaccttatacccccttggaaactgatgaactcggtcgatccaatcagggtatggtttccta |
24380861 |
T |
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| Q |
601 |
gacgtcggcctcattaagggcctgacgtcaattccaagct |
640 |
Q |
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| T |
24380862 |
gacgtcgacctcattaagggcctgacgtcaattccaagct |
24380901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 528 - 607
Target Start/End: Original strand, 5509817 - 5509895
Alignment:
| Q |
528 |
aacaaactcaggcaccttatacccccttggaaactgatgaactcggtcgatccaatcagcgtatggtttcctagacgtcg |
607 |
Q |
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| T |
5509817 |
aacaaactcgggcaccttatacccctttggaaactgatgaactcggtcgatccaatccgggtatgg-ttcctagacgtcg |
5509895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 30733437 - 30733491
Alignment:
| Q |
242 |
acctcgcgatgtactttttgaccgactcgccttggagctgactaagtcttgccaa |
296 |
Q |
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| T |
30733437 |
acctcgcgatgtactttttgaccgactcgccttggagctgactaagtcttgccaa |
30733491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 265
Target Start/End: Complemental strand, 43169068 - 43169039
Alignment:
| Q |
236 |
tcctaaacctcgcgatgtactttttgaccg |
265 |
Q |
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| T |
43169068 |
tcctaaacctcgcgatgtactttttgaccg |
43169039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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