View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_high_3 (Length: 499)
Name: NF15247_high_3
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_high_3 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 208 - 499
Target Start/End: Original strand, 23982689 - 23982980
Alignment:
| Q |
208 |
tgagggtcaatgcagtcaggtttcaattgagggtcagtggaatgagaatttgcatgaggaacatcatgggtggaatgatgatgattttgttaaggatcta |
307 |
Q |
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| T |
23982689 |
tgagggtcaatgcaatcaggtttcaattgagggtcagtggaatgagaatttgcatgaggaacatcatgggtggaacgatgatgattttgttaaggatcta |
23982788 |
T |
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| Q |
308 |
tggaacgcactgcctgatgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaacttctct |
407 |
Q |
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| T |
23982789 |
tggaacgcactgcctgatgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaacttctct |
23982888 |
T |
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| Q |
408 |
aaccaaatttaattcatatgcatgttttaaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgt |
499 |
Q |
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| T |
23982889 |
aacccaatttaattcatatgcgtgttttaaaatggttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgt |
23982980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 23982475 - 23982697
Alignment:
| Q |
21 |
gggatgtgcatgagaatcagttgtatgatgattcagtacctgagcatcaacagaatgaagatgaggatgatcagatgagtgatgaggatcattatgagga |
120 |
Q |
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| T |
23982475 |
gggatatgcatgaggatcagttgtatgatgattcagtacctgagcatcaacagaatgaagatgaggatgatcagatgagtgatgaggatcattatgagga |
23982574 |
T |
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| Q |
121 |
tatgttatgcgaagtttcaaacgagggtcggttgaatgaggatcatcgaagtgtgaagtttaatcatgggtggaatgattatttgcatgagggtcaatgc |
220 |
Q |
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| T |
23982575 |
tatgttatgcgaagtttcaaacgacggtcggttgaatgaggatcatcgaagtgtgaagtttaatcatgggtggaatgattatttgcatgagggtcaatgc |
23982674 |
T |
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| Q |
221 |
agtcaggtttcaattgagggtca |
243 |
Q |
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| T |
23982675 |
aatcaggtttcaattgagggtca |
23982697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 227 - 499
Target Start/End: Original strand, 23989393 - 23989662
Alignment:
| Q |
227 |
gtttcaattgagggtcagtggaatgagaatttgcatgaggaacatcatgggtggaatgatgatgattttgttaaggatctatggaacgcactgcctgatg |
326 |
Q |
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| T |
23989393 |
gtttcgatcgagggtcagtgcaatgagaatttgtatgaggatcatcacgggtggaatgatgattacaatg---agtatctatggaacggactgcacaatg |
23989489 |
T |
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| Q |
327 |
agacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaacttctctaaccaaatttaattcatat |
426 |
Q |
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| T |
23989490 |
agatctttgaacatgtttacagttgtttcccggtctcatctcttaaaagggtatgtcacatgatgtatatctaacttctctaacccaatttaattcatat |
23989589 |
T |
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| Q |
427 |
gcatgttttaaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgt |
499 |
Q |
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| T |
23989590 |
gcatgttctaaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgt |
23989662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 23989263 - 23989390
Alignment:
| Q |
28 |
gcatgagaatcagttgtatgatgattcagtacctgagcatcaacagaatgaagatgaggatgatcagatgagtgatgaggatcattatgaggatatgtta |
127 |
Q |
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| T |
23989263 |
gcatgaggatcagttgtatgatgattca---cctgagcatcaacagaatgaatatgaggatgatcagatgagtgaggaggatcattacgacgatatgtta |
23989359 |
T |
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| Q |
128 |
tgcgaagtttcaaacgagggtcggttgaatg |
158 |
Q |
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| T |
23989360 |
tgtgaagtttcaaaggaggatcggttgaatg |
23989390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 324 - 490
Target Start/End: Original strand, 23965498 - 23965664
Alignment:
| Q |
324 |
atgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaacttctctaaccaaatttaattca |
423 |
Q |
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| T |
23965498 |
atgagatctttgaacatgtttacagttgtttctctgtctcatctctgaatagggtatgtcaccttatgcatatctaacttctctaacccaatttcattct |
23965597 |
T |
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| Q |
424 |
tatgcatgttttaaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaacaaattg |
490 |
Q |
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| T |
23965598 |
tatgtacagtttaaaattgttttacaacgacaatcaatcactactcaccaagaaaactaacaaattg |
23965664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 42351381 - 42351330
Alignment:
| Q |
435 |
taaaattgttttatagcgacaatcaatcacaacttgctaagaaaacaaacaa |
486 |
Q |
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| T |
42351381 |
taaaattgttttaaaccgacaatcaatcataacttgctaagacaacaaacaa |
42351330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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