View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_high_4 (Length: 491)
Name: NF15247_high_4
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 154 - 472
Target Start/End: Original strand, 7307924 - 7308242
Alignment:
| Q |
154 |
tacacatacaaggatcccaacaccattcataatagaggcaatgagacaacttcgatttactcaaccaccatttctacaataaaagcttgatatccaccac |
253 |
Q |
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| T |
7307924 |
tacacatacaaggatcccaacaccattcataacagaggcaatgagacaacttcgatttactcaatcaccatttctacaataaaagcttgatatccaccac |
7308023 |
T |
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| Q |
254 |
ctccaccggatccttatctccattttcaaaaaatttgcccttccaattaaacactctacaccacacaactgaaacaaaattgcaatgaaggaacaaaagt |
353 |
Q |
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| T |
7308024 |
ctccaccgaatccttatctccattttcaaaaaatttgcccttccaattaaacactctacaccacacaactgaaacaaaattgcaatgaaggaacaaaagt |
7308123 |
T |
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| Q |
354 |
agtgcagattcctcgttccccacacacaacccaatccattgaatcacctaatggaatgactcctcgattccctgtattaactagattaattttagacgga |
453 |
Q |
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| T |
7308124 |
agtgcagattcctcgttccccacacacaacccaatccattgaatcacctaatggaatgactcctcgattcgctgtattaactagattaattttagacgga |
7308223 |
T |
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| Q |
454 |
attctttccgagagaaagc |
472 |
Q |
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| T |
7308224 |
attctttccgagagaaagc |
7308242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 7307781 - 7307867
Alignment:
| Q |
11 |
cacagatcccagaaagaaagaaaaaagaacctggtagaaacacaatacagaacctgctgcaaccaaatacccgaaacaatacagagt |
97 |
Q |
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| T |
7307781 |
cacagatcccagaaagaatgaaaaaagaacctggtagaaacacaatacagaacctgctgcaaccaaatacccgaaacaatacagagt |
7307867 |
T |
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