View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_high_5 (Length: 415)
Name: NF15247_high_5
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 9217731 - 9218130
Alignment:
| Q |
1 |
tttcaccaatcatagctaaagcccatcctctggatgaccaaggcttcacaataaaatgtagttcacttggaggcacatgttgtattcctgcatgtttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9217731 |
tttcaccaatcatagctaaagcccatcctctggatggccaaggcttcacaataaaatgtagttcacttggaggcacatgttgtattcctgcatgtttttg |
9217830 |
T |
|
| Q |
101 |
acattcttgacaacccttagcaaattgttaacaatgaaattagtggatactgcatactagtaacatgattaaaataattattaacaatgaaagtttatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9217831 |
acattcttgacaacccttagcaaattgttaacaatgaaattagtggatactgcatactagtaacatgattaaaataattattaacaatgaaagtttatat |
9217930 |
T |
|
| Q |
201 |
attgatcctatagtgataactacatacatgtaatgactttatcaataaataaaatcaaaagtaaaaaatttattaggtcaatcattcacaatagaaagtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9217931 |
attgatcctatagtgataactacatacatgtaatgactttatcaataaataaaatcaaaagtaaaaaatttattaggtcaatcattcacaatagaaagtc |
9218030 |
T |
|
| Q |
301 |
tttttaccaacactttcaaaatcaattgatcctatagtgaaaggtatatatatatcacaatcatcttccatcatccaagacaatcaatggctgatctttc |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9218031 |
tttttaccaaccctttcaaaatcaattgatcctatagtgaaaggtatatatatatcacaatcatcttccatcatccaagacaatcaatggctgatctttc |
9218130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 304
Target Start/End: Original strand, 9194827 - 9194931
Alignment:
| Q |
200 |
tattgatcctatagtgataactacatacatgtaatgactttatc-aataaataaaatcaaaagtaaaa-aatttattaggtcaatcattcacaatagaaa |
297 |
Q |
| |
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|||| |||||||||||| | |||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||| |
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| T |
9194827 |
tattcatcctatagtga--attacatacatgtaatgactttttttaataaataaaatcaaaagtaaaaaaatttattgggtcaatcatacacaatacaaa |
9194924 |
T |
|
| Q |
298 |
gtctttt |
304 |
Q |
| |
|
||||||| |
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|
| T |
9194925 |
gtctttt |
9194931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 9161173 - 9161221
Alignment:
| Q |
352 |
atatcacaatcatcttccatcatccaagacaatcaatggctgatctttc |
400 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||| ||||||||| |
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| T |
9161173 |
atatcacaatcatcttccatcatctaaggcaatcaatggttgatctttc |
9161221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 9169999 - 9170047
Alignment:
| Q |
352 |
atatcacaatcatcttccatcatccaagacaatcaatggctgatctttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
9169999 |
atatcacaatcatcttccatcatccaaggcaatcaatgattgatctttc |
9170047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 9199562 - 9199614
Alignment:
| Q |
348 |
atatatatcacaatcatcttccatcatccaagacaatcaatggctgatctttc |
400 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
9199562 |
atatacatcacaatcatcttccactatccaagacaatcaatggttgatctttc |
9199614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 9155261 - 9155309
Alignment:
| Q |
352 |
atatcacaatcatcttccatcatccaagacaatcaatggctgatctttc |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
9155261 |
atatcagaatcatcttccatcatccaagataatcaatgattgatctttc |
9155309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 9146401 - 9146445
Alignment:
| Q |
352 |
atatcacaatcatcttccatcatccaagacaatcaatggctgatc |
396 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |||| ||||| |
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| T |
9146401 |
atatcacagtcatcttccatcatccaaggcaatcgatggttgatc |
9146445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 22849680 - 22849738
Alignment:
| Q |
54 |
aaatgtagttcacttggaggcacatgttgtattcctgcatgtttttgacattcttgaca |
112 |
Q |
| |
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||||||| |||||| | |||||||||||| |||||| ||||| ||||||||||||||| |
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| T |
22849680 |
aaatgtaattcactagcaggcacatgttggattcctacatgtagttgacattcttgaca |
22849738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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