View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_high_8 (Length: 317)
Name: NF15247_high_8
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_high_8 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0352 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 29199775 - 29199476
Alignment:
| Q |
18 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnncttacataaacaaaacacataatgcagcataacacacaccgac |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199775 |
atggctaaacagaaacatcgaaagcaggcctgaatttgaagtagcagaggaaaaaaacttacataaacaaaacacataatgcagcataacacacaccgac |
29199676 |
T |
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| Q |
118 |
agccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199675 |
agccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaa |
29199576 |
T |
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| Q |
218 |
gaaagagaacataaaagtgatatcaatatctcatagttggtgtgatcaagaatttttcacagtagcaataaaatgcttaaaaagaaaaaccaagagatgg |
317 |
Q |
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| T |
29199575 |
gaaagaggacataaaagtgatatcaataactcatagttggtgtgatcaagaatttttcacagtagcaataaaatgcttaaaaagaaaaaccaagagatgg |
29199476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 19768260 - 19768134
Alignment:
| Q |
18 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
114 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
19768260 |
atggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcagaggaaaaaaacttacataaacaaaacacataatgcagtataacacacact |
19768161 |
T |
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| Q |
115 |
gacagccacgaagaaaaagctccctca |
141 |
Q |
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| T |
19768160 |
gacagccacgaagaaaaagctccctca |
19768134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 12572353 - 12572461
Alignment:
| Q |
18 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
114 |
Q |
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||||||||| ||||| || ||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| || |||||||||| |
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| T |
12572353 |
atggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacact |
12572452 |
T |
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| Q |
115 |
gacagccac |
123 |
Q |
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||| ||||| |
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| T |
12572453 |
gactgccac |
12572461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 13548817 - 13548925
Alignment:
| Q |
18 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
114 |
Q |
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||||||||| ||||| || ||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| || |||||||||| |
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| T |
13548817 |
atggctaaaaagaaaaattgaaggcagacctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacact |
13548916 |
T |
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| Q |
115 |
gacagccac |
123 |
Q |
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||| ||||| |
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| T |
13548917 |
gactgccac |
13548925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 4351747 - 4351512
Alignment:
| Q |
18 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcag---aggnnnnnnncttacataaacaaaacacataatgcagcataacacacacc |
114 |
Q |
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||||||||| ||||| |||||| |||||||| ||||||||||||||| ||| ||||||||||||||||| | ||||| || |||||||||| |
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| T |
4351747 |
atggctaaaaagaaaaatcgaaggcagacctaaatttgaagtagcagcgcaggaacaaaacttacataaacaaaacaaacaatgccgcgtaacacacact |
4351648 |
T |
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| Q |
115 |
gacagccacgaagaaaaa-gctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgat |
213 |
Q |
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||| |||||||| ||||| |||||||||||||||||| |||||||||||| || ||||| || |||||||||| ||||||||||||| |||||||||||| |
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| T |
4351647 |
gactgccacgaaaaaaaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattgaatgctt-gtaaacttccaatgcactgaaatgat |
4351549 |
T |
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| Q |
214 |
ttaagaaagagaacataaaagtgatatcaatatctca |
250 |
Q |
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| ||||||||| |||||||| ||||||||||| |||| |
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| T |
4351548 |
tcaagaaagaggacataaaaatgatatcaataactca |
4351512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 4351489 - 4351426
Alignment:
| Q |
254 |
ttggtgtgatcaagaatttttcacagtagcaataaaatgcttaaaaagaaaaaccaagagatgg |
317 |
Q |
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|||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4351489 |
ttggtgtgataaaaaaaattccacagtagcaataaaatgcttaaaaagaaaaaccaagagatgg |
4351426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 15387 - 15507
Alignment:
| Q |
129 |
aaaagctccctcacaaacgattaaagatctaacaaagcacatccaaatttgaatgctttgtaaacttccaatacactgaaatgatttaagaaagagaaca |
228 |
Q |
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|||||||||||||||||||||| |||||||||||| || ||||| || || ||||||| ||||||||||||| ||| ||||||||| ||||||||| ||| |
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| T |
15387 |
aaaagctccctcacaaacgattcaagatctaacaatgcccatccgaaattaaatgctt-gtaaacttccaatgcacagaaatgattcaagaaagaggaca |
15485 |
T |
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| Q |
229 |
taaaagtgatatcaatatctca |
250 |
Q |
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||||||||||||||||| |||| |
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| T |
15486 |
taaaagtgatatcaataactca |
15507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 15551 - 15593
Alignment:
| Q |
275 |
cacagtagcaataaaatgcttaaaaagaaaaaccaagagatgg |
317 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15551 |
cacagtagcaataaaatgcttaaaaaggaaaaccaagagatgg |
15593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 22082953 - 22082827
Alignment:
| Q |
18 |
atggctaaacagaaacatcgaaagcagacctgaatttgaagtagcagaggnnnnnnn---cttacataaacaaaacacataatgcagcataacacacacc |
114 |
Q |
| |
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||||| |||||||||||| ||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |
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| T |
22082953 |
atggcaaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagaaaaaaaacttacataaacaaaacacataatgcagtataacacacact |
22082854 |
T |
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| Q |
115 |
gacagccacgaagaaaaagctccctca |
141 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22082853 |
gacagccacgaagaaaaagctccctca |
22082827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 51389747 - 51389888
Alignment:
| Q |
76 |
ttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctcacaaacgattaaagatctaacaaagcacatccaaa |
175 |
Q |
| |
|
||||||||||||| |||| || ||||||||||| ||||||| |||||| |||||| || |||||||||||||||| || ||| ||||||| ||||| || |
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| T |
51389747 |
ttacataaacaaaccacacaacgcagcataacatacaccgatagccacaaagaaatag-tccctcacaaacgattcaaagtcttacaaagcccatccgaa |
51389845 |
T |
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| Q |
176 |
tttgaatgctttgtaaacttccaatacactgaaatgatttaaga |
219 |
Q |
| |
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|| |||||| | ||||| ||||||| ||||||||||||| |||| |
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| T |
51389846 |
ttcgaatgc-tagtaaatttccaatgcactgaaatgattcaaga |
51389888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 37617082 - 37617148
Alignment:
| Q |
75 |
cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca |
141 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
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| T |
37617082 |
cttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctca |
37617148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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