View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15247_low_1 (Length: 768)

Name: NF15247_low_1
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15247_low_1
NF15247_low_1
[»] chr4 (15 HSPs)
chr4 (485-645)||(46305876-46306028)
chr4 (161-288)||(46024953-46025083)
chr4 (202-288)||(46306535-46306617)
chr4 (485-599)||(46025371-46025482)
chr4 (485-599)||(46262176-46262287)
chr4 (75-114)||(46306624-46306663)
chr4 (161-234)||(46263158-46263238)
chr4 (436-488)||(46306063-46306111)
chr4 (230-288)||(46262575-46262629)
chr4 (632-668)||(46305825-46305861)
chr4 (294-337)||(46025129-46025172)
chr4 (294-337)||(46262486-46262529)
chr4 (294-337)||(46306446-46306489)
chr4 (115-164)||(46302775-46302822)
chr4 (485-535)||(46306197-46306247)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 5e-55; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 485 - 645
Target Start/End: Complemental strand, 46306028 - 46305876
Alignment:
Q  485 atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaatagatgataactctagacacacttgtagaagc 584  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  46306028 atttctagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaata---gataactctagacacacttgtagaagc 46305932  T
Q  585 ttccttgatacacacacacttctagataaattcctcaattttcctataatttcaaattatt 645  Q
    |||||||||    ||||||||||||||||||||||||||||| |||||||||  |||||||    
T  46305931 ttccttgat----acacacttctagataaattcctcaatttt-ctataatttttaattatt 46305876  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 46024953 - 46025083
Alignment:
Q  161 ttcttgtcgtgattatcaaatggatgttggttcctaaaagacaaa-------gaaagagatgcagaattaaaatatatgtttacaaaaggccaaggacgt 253  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||       ||| ||||||||||||||||||| ||||||||||||||||||||        
T  46024953 ttcttgtggtgattatcaaatgaatgttggttcctaaaagacaaaaaagagggaatgagatgcagaattaaaataaatgtttacaaaaggccaagg---- 46025048  T
Q  254 acgtgaatcatatgcagtagaacttgcggttggtg 288  Q
    ||||||||||| |||||||||||||||||||||||    
T  46025049 acgtgaatcatgtgcagtagaacttgcggttggtg 46025083  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 46306617 - 46306535
Alignment:
Q  202 caaagaaagagatgcagaattaaaatatatgtttacaaaaggccaaggacgtacgtgaatcatatgcagtagaacttgcggttggtg 288  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||    
T  46306617 caaagaaagagatgcagaattaaaataaatgtttacaaaaggccaagg----acgtgaatcatgtgcagtagaacttgcggttggtg 46306535  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 599
Target Start/End: Original strand, 46025371 - 46025482
Alignment:
Q  485 atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaatagatgataactctagacacacttgtagaagc 584  Q
    |||| |||||||| ||||||||| |||||||||||| || ||||||||||| ||||| || |||||||||   |||||||||| |||||||||||| |||    
T  46025371 atttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaatttacaagtgctaata---gataactctatacacacttgtaggagc 46025467  T
Q  585 ttccttgatacacac 599  Q
    |||||| ||||||||    
T  46025468 ttccttaatacacac 46025482  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 485 - 599
Target Start/End: Complemental strand, 46262287 - 46262176
Alignment:
Q  485 atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaatagatgataactctagacacacttgtagaagc 584  Q
    |||| |||||||| ||||||||| |||||||||||| || | ||||||||| ||||| || |||||||||   |||||||||| ||||||||| || |||    
T  46262287 atttctagaaaacttacaattttattgatttcaaatgtcgactacaaggaggaatttacaagtgctaata---gataactctatacacacttgcaggagc 46262191  T
Q  585 ttccttgatacacac 599  Q
    |||||| ||||||||    
T  46262190 ttccttaatacacac 46262176  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 46306663 - 46306624
Alignment:
Q  75 atgttatgcgtaacttatatgtttttggccagagtgtata 114  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46306663 atgttatgcgtaacttatatgtttttggccagagtgtata 46306624  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 46263238 - 46263158
Alignment:
Q  161 ttcttgtcgtgattatcaaatggatgttggttcctaaaagacaaa-------gaaagagatgcagaattaaaatatatgtt 234  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||       ||| ||||||||||||||||||| |||||    
T  46263238 ttcttgtggtgattatcaaatgaatgttggttcctaaaagacaaaaaagagggaatgagatgcagaattaaaataaatgtt 46263158  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 46306111 - 46306063
Alignment:
Q  436 aggaatcgattaatctatatatcacacttgtaggagcttccttaatacaattt 488  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  46306111 aggaatcgattaatctat----cacacttgtaggagcttccttaatacaattt 46306063  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 46262629 - 46262575
Alignment:
Q  230 atgtttacaaaaggccaaggacgtacgtgaatcatatgcagtagaacttgcggttggtg 288  Q
    ||||||||||||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  46262629 atgtttacaaaaggccaaggacgt----gaatcatgtgcagtagaacttgtggttggtg 46262575  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 668
Target Start/End: Complemental strand, 46305861 - 46305825
Alignment:
Q  632 aatttcaaattattataagaggcttccaacattcctt 668  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46305861 aatttcaaattattataagaggcttccaacactcctt 46305825  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 46025129 - 46025172
Alignment:
Q  294 aaaaattgtattcatgttgtcttgtaactcgataaaaattatga 337  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  46025129 aaaaattgtattcatgttgtcttgtatattgataaaaattatga 46025172  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 46262529 - 46262486
Alignment:
Q  294 aaaaattgtattcatgttgtcttgtaactcgataaaaattatga 337  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  46262529 aaaaattgtattcatgttgtcttgtatattgataaaaattatga 46262486  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 46306489 - 46306446
Alignment:
Q  294 aaaaattgtattcatgttgtcttgtaactcgataaaaattatga 337  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  46306489 aaaaattgtattcatgttgtcttgtatattgataaaaattatga 46306446  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 46302822 - 46302775
Alignment:
Q  115 tataaagactcaacttctttctgcatgttgtttactaataataatcttct 164  Q
    |||||||||||||||||||||||||||||| ||| |  ||||||||||||    
T  46302822 tataaagactcaacttctttctgcatgttggttatt--taataatcttct 46302775  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 46306247 - 46306197
Alignment:
Q  485 atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggag 535  Q
    |||| |||||||| ||||||||| |||||||||||| || |||||||||||    
T  46306247 atttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggag 46306197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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