View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_low_12 (Length: 289)
Name: NF15247_low_12
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 289
Target Start/End: Complemental strand, 8316050 - 8315886
Alignment:
| Q |
134 |
gtgatggaaatccaaatccaatggaagaaaaagaaa---------agagaagcgatgtaggtcaagactaacaagggttcggcaggtgaagatggtaata |
224 |
Q |
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| T |
8316050 |
gtgatggaaatccaaatccaatggaaaaaaaaaaaagcccttgacagagaagcgatggaggtcaagactaacaagggttctgcaggtgaagattgtaata |
8315951 |
T |
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| Q |
225 |
ggcaattttggtaagtagctattatcataatcatccacgtcgagatgaagatcatcatcatcata |
289 |
Q |
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| T |
8315950 |
ggcaattttggtaagtagctattatcataatcatctacgtcgagatggagatcatcatcatcata |
8315886 |
T |
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Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 1019673 - 1019782
Alignment:
| Q |
170 |
agagaagcgatgtaggtcaagactaacaagggttcggcaggtgaagatggtaataggcaattttggtaagtagctattatcataatcatccacgtcgaga |
269 |
Q |
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| T |
1019673 |
agagaagtgatggaggtcaagactaacaagggttcggcaggtgaagatggtaataggcaattttggtaagtagctattatcataatcatccacgtcgaga |
1019772 |
T |
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| Q |
270 |
tgaagatcat |
279 |
Q |
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| T |
1019773 |
tggagatcat |
1019782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1015107 - 1015181
Alignment:
| Q |
1 |
cataattactttcagctcatgtactagttcagctttctgtt-agaaaatttattggcctactgccattgccatat |
74 |
Q |
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| T |
1015107 |
cataattactttcagctcatgtactagttcagttttctgttgagaaaatttattggcctgctgccattgccatat |
1015181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 1025565 - 1025671
Alignment:
| Q |
134 |
gtgatggaaatccaaatccaatggaagaaaaagaaa----------agagaagcgatgtaggtcaagactaacaagggttcggcaggtgaagatggtaat |
223 |
Q |
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| T |
1025565 |
gtgatggaaatccaaatccaatggaagaaaaagaaaaacccttaacagagaagtgacggagatcgagactaacaagggttttgcaggtgaagatggcaat |
1025664 |
T |
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| Q |
224 |
aggcaat |
230 |
Q |
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| T |
1025665 |
aggcaat |
1025671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 1407265 - 1407232
Alignment:
| Q |
134 |
gtgatggaaatccaaatccaatggaagaaaaaga |
167 |
Q |
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| T |
1407265 |
gtgatggaaatccaaatccaatagaagaaaaaga |
1407232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40637828 - 40637757
Alignment:
| Q |
1 |
cataattactttcagctcatgtactagttcagctttctgt-tagaaaatttattggcctactgccattgcca |
71 |
Q |
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| T |
40637828 |
cataattacttccaactcatgtacttgttcagttttctgtggagaaaatttgttggcccactgccattgcca |
40637757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 35767645 - 35767609
Alignment:
| Q |
134 |
gtgatggaaatccaaatccaatggaagaaaaagaaaa |
170 |
Q |
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| T |
35767645 |
gtgatggaaatccaaatccaattgaagaaaaagaaaa |
35767609 |
T |
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