View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_low_13 (Length: 266)
Name: NF15247_low_13
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_low_13 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: scaffold0710 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4586 - 4343
Alignment:
| Q |
1 |
tctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagcttttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586 |
tctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagcttttct |
4487 |
T |
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| Q |
101 |
tagtattgttggtttcatgatccattgaaacttttatgcctaaatcaacttttgaatgagatagtcattaaaagtttcagttatgataaagggtctgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4486 |
tagtattgttggtttcatgatccattgaaacttttatgcctaaatcaaattttgaatgagatagtcattaaaagtttcagttatgataaagggtctgtta |
4387 |
T |
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| Q |
201 |
cttatatagcttaaatgctttggacaagagaagagaatattgaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4386 |
cttatatagcttaaatgctttggacaagagaagagaatattgaa |
4343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 51860627 - 51860384
Alignment:
| Q |
1 |
tctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagcttttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51860627 |
tctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagcttttct |
51860528 |
T |
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| Q |
101 |
tagtattgttggtttcatgatccattgaaacttttatgcctaaatcaacttttgaatgagatagtcattaaaagtttcagttatgataaagggtctgtta |
200 |
Q |
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| T |
51860527 |
tagtattgttggtttcatgatccattgaaacttttatgcctaaatcaaattttgaatgagatagtcattaaaagtttcagttatgataaagggtctgtta |
51860428 |
T |
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| Q |
201 |
cttatatagcttaaatgctttggacaagagaagagaatattgaa |
244 |
Q |
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| T |
51860427 |
cttatatagcttaaatgctttggacaagagaagagaatattgaa |
51860384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 51850180 - 51850064
Alignment:
| Q |
1 |
tctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagcttttct |
100 |
Q |
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||||||||||| |||||||||||| | ||| | |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| || |
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| T |
51850180 |
tctttgccaacattccaaattgtcttcctcattgaacctggaaatcttttcactttataaacaaaactgtaaaatgatttccaatggcttgagcttctca |
51850081 |
T |
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| Q |
101 |
tagtattgttggtttca |
117 |
Q |
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|||||||||| |||||| |
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| T |
51850080 |
tagtattgttagtttca |
51850064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 51820630 - 51820490
Alignment:
| Q |
1 |
tctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagcttttct |
100 |
Q |
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||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| | ||| |
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| T |
51820630 |
tctttgccaactttccaaatttccctcctcaccaaacctggaaatcttttcactttatcagctaaactgtaaatgaatttccaatggcttgagcatgtct |
51820531 |
T |
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| Q |
101 |
tagtattgttggtttcatgatccattgaaacttttatgcctaaa |
144 |
Q |
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||||| |||||||||| | |||||||||||| ||||||||| |
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| T |
51820530 |
tagtactgttggtttc---agtcattgaaactttcatgcctaaa |
51820490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 49809173 - 49809236
Alignment:
| Q |
32 |
ctaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagct |
95 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
49809173 |
ctaaacctcgaaatcttttcactttataagcaaaactgtaaaatgatttccaatggcttgagct |
49809236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 51379904 - 51380008
Alignment:
| Q |
10 |
actttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaaactgtaaaatgatttccaatagcttgagcttttcttagtattgt |
109 |
Q |
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||||||| | ||||||| || |||||||||||||||||| ||||||| ||||| ||||||| |||||||||| |||||||||| |||| ||||| |
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| T |
51379904 |
actttccgagttgtcctcctcgctaaacctggaaatcttt-cactttacaagcaatactgtaattggatttccaatggcttgagcttcccttatgattgt |
51380002 |
T |
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| Q |
110 |
tggttt |
115 |
Q |
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|||||| |
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| T |
51380003 |
tggttt |
51380008 |
T |
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