View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15247_low_16 (Length: 208)

Name: NF15247_low_16
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15247_low_16
NF15247_low_16
[»] chr4 (9 HSPs)
chr4 (16-115)||(21802753-21802852)
chr4 (16-115)||(34737985-34738084)
chr4 (16-115)||(21632956-21633055)
chr4 (16-98)||(53830695-53830777)
chr4 (75-116)||(5874248-5874289)
chr4 (32-106)||(26376841-26376915)
chr4 (71-109)||(43942118-43942156)
chr4 (32-102)||(51868290-51868360)
chr4 (32-93)||(27256579-27256640)
[»] chr8 (7 HSPs)
chr8 (16-104)||(4138185-4138273)
chr8 (16-106)||(10186220-10186310)
chr8 (16-91)||(8150677-8150752)
chr8 (32-103)||(14597489-14597560)
chr8 (71-115)||(20171813-20171857)
chr8 (71-115)||(44218534-44218578)
chr8 (85-115)||(44212153-44212183)
[»] chr3 (5 HSPs)
chr3 (16-98)||(35870217-35870299)
chr3 (71-115)||(346592-346636)
chr3 (75-115)||(10179408-10179448)
chr3 (16-98)||(26215157-26215240)
chr3 (85-115)||(34209855-34209885)
[»] chr2 (3 HSPs)
chr2 (16-93)||(41646891-41646969)
chr2 (30-112)||(37904075-37904157)
chr2 (75-108)||(40652803-40652836)
[»] chr5 (2 HSPs)
chr5 (16-98)||(21605253-21605334)
chr5 (16-98)||(37302174-37302256)
[»] chr7 (3 HSPs)
chr7 (75-115)||(14755767-14755807)
chr7 (71-115)||(44393523-44393567)
chr7 (16-46)||(47234008-47234038)
[»] chr6 (1 HSPs)
chr6 (75-115)||(18882289-18882329)
[»] chr1 (2 HSPs)
chr1 (75-115)||(39623057-39623097)
chr1 (75-115)||(42332478-42332518)
[»] scaffold0316 (1 HSPs)
scaffold0316 (35-104)||(5480-5549)
[»] scaffold0061 (1 HSPs)
scaffold0061 (75-115)||(50590-50630)
[»] scaffold0017 (1 HSPs)
scaffold0017 (75-115)||(148004-148044)
[»] scaffold1521 (1 HSPs)
scaffold1521 (80-117)||(107-144)
[»] scaffold0152 (2 HSPs)
scaffold0152 (80-117)||(30575-30612)
scaffold0152 (80-117)||(31366-31403)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 21802852 - 21802753
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||| ||   |||||||||||| |||||||||||||||||||||||||||||||    
T  21802852 cataagtatgagagattagttagaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgtatatagagatagagatagagat 21802753  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 34737985 - 34738084
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||||||||||||||||||||||| | || ||||||||| ||||| |   ||||||||| ||| |||||||||||||||||||||||||||||||    
T  34737985 cataagtatgagagattagttagaaagggaggcattggtaaggtgacacatatgcaaaatgtaggttagaatacatgtatatagagatagagatagagat 34738084  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 21632956 - 21633055
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagatagagatagagat 115  Q
    |||||||||||||||||||||||||||||||  | ||||||||| ||||| ||  ||||||||||||| ||||||||||||   | ||||||||||||||    
T  21632956 cataagtatgagagattagttagaaaggggggtattggtaaggtgacacataggcaaaatgtagcttagaatacatgtataataatatagagatagagat 21633055  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 53830695 - 53830777
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatata 98  Q
    |||||||||||||||||||||| |||||||| ||  |||||||| ||||| ||  ||||||||||||| |||| || ||||||    
T  53830695 cataagtatgagagattagttaaaaaggggggcatcggtaaggtgacacataggaaaaatgtagcttagaatatatatatata 53830777  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 5874289 - 5874248
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagatt 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  5874289 tgtagcttagaatacatgtatatagagatagagatagagatt 5874248  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 26376915 - 26376841
Alignment:
Q  32 tagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagataga 106  Q
    ||||||||||||||||   | || |||| ||||| || |||||||||| ||| |||||||||||||| |||||||    
T  26376915 tagttagaaagggggatgtttgtgaggttacacataggtaaaatgtaggttagaatacatgtatatatagataga 26376841  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 43942156 - 43942118
Alignment:
Q  71 aaaatgtagcttataatacatgtatatagagatagagat 109  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  43942156 aaaatgtagattagaatacatgtatatagagatagagat 43942118  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 51868360 - 51868290
Alignment:
Q  32 tagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagaga 102  Q
    ||||||||||||||| || ||||||||| ||||| |   ||||||||  ||| ||||||||||||||||||    
T  51868360 tagttagaaaggggggcattggtaaggtgacacataagcaaaatgtatgttagaatacatgtatatagaga 51868290  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 27256640 - 27256579
Alignment:
Q  32 tagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgt 93  Q
    ||||||||||||||| || ||||||||| ||||| ||  ||||||||| ||| |||||||||    
T  27256640 tagttagaaaggggggcattggtaaggtgacacataggaaaaatgtaggttagaatacatgt 27256579  T

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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 4138273 - 4138185
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagata 104  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||| ||   |||||||||||| ||||||||||||||||||||    
T  4138273 cataagtatgagagattagttagaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgtatatagagata 4138185  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 10186310 - 10186220
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagataga 106  Q
    |||||||| |||| ||||||||||||||||| || ||||||||| ||||| ||   |||||||||||| |||||||||||||| |||||||    
T  10186310 cataagtaagagatattagttagaaaggggggcattggtaaggtgacacataggcgaaatgtagcttagaatacatgtatatatagataga 10186220  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 8150677 - 8150752
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacat 91  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||| |   ||||||||||||| |||||||    
T  8150677 cataagtatgagagattagttagaaaggggggcattggtaaggtgacacatatgcaaaatgtagcttagaatacat 8150752  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 14597489 - 14597560
Alignment:
Q  32 tagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagat 103  Q
    |||||||||||||||  | ||||||||| ||| | ||  ||||||||||||| |||||||||||||||||||    
T  14597489 tagttagaaaggggggaattggtaaggtgacatataggcaaaatgtagcttagaatacatgtatatagagat 14597560  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 20171857 - 20171813
Alignment:
Q  71 aaaatgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||    
T  20171857 aaaatgtagtttaaaatacatatatatagagatagagatagagat 20171813  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 44218578 - 44218534
Alignment:
Q  71 aaaatgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| |||||||||||| || |||||||||||||||||||    
T  44218578 aaaatgtagattataatacatgcatgtagagatagagatagagat 44218534  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 44212183 - 44212153
Alignment:
Q  85 aatacatgtatatagagatagagatagagat 115  Q
    |||||||||||||||||||||||||||||||    
T  44212183 aatacatgtatatagagatagagatagagat 44212153  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 35870299 - 35870217
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatata 98  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||| || ||||||    
T  35870299 cataagtatgagagattagttagaaaggggggcattggtaaggtgacacatagaaaaaatgtagcttagaatatatatatata 35870217  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 346636 - 346592
Alignment:
Q  71 aaaatgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  346636 aaaatgtagtttagaatacatgtatatagagatagagatagagat 346592  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 10179408 - 10179448
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  10179408 tgtagtttagaatacatgtatatagagatagagatagagat 10179448  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 26215240 - 26215157
Alignment:
Q  16 cataagtatgagagattagtta-gaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatata 98  Q
    ||||||||||||||||||||||  ||||||  ||| |||| | |||||||| |  |||||||||| ||| ||||||||||||||    
T  26215240 cataagtatgagagattagttacaaaagggaaacattggtgaagtaacacataagtaaaatgtagtttagaatacatgtatata 26215157  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 34209885 - 34209855
Alignment:
Q  85 aatacatgtatatagagatagagatagagat 115  Q
    |||||||||||||||||||||||||||||||    
T  34209885 aatacatgtatatagagatagagatagagat 34209855  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 41646891 - 41646969
Alignment:
Q  16 cataagtatgagagattagttagaaaggggg-acactggtaaggtaacacacagataaaatgtagcttataatacatgt 93  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||| ||||| ||  |||||||||||||||||||||||    
T  41646891 cataagtatgagagattagttaaaaaggggggacattggtaaggtgacacataggaaaaatgtagcttataatacatgt 41646969  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 37904075 - 37904157
Alignment:
Q  30 attagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagatagagataga 112  Q
    |||||||||| |||||| || |||| |||| ||||| ||  ||||||||||||| |||||||||||||| ||||| |||||||    
T  37904075 attagttagagaggggggcattggtgaggtgacacataggaaaaatgtagcttagaatacatgtatatatagatatagataga 37904157  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 40652803 - 40652836
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagaga 108  Q
    ||||||||| ||||||||||||||||||||||||    
T  40652803 tgtagcttagaatacatgtatatagagatagaga 40652836  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 21605253 - 21605334
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatata 98  Q
    |||||||||||||||||||||||||||||||  | ||||||||| ||||| ||  ||||||||||||| |||| || ||||||    
T  21605253 cataagtatgagagattagttagaaaggggg-tattggtaaggtgacacataggaaaaatgtagcttagaatatatatatata 21605334  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 37302174 - 37302256
Alignment:
Q  16 cataagtatgagagattagttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatata 98  Q
    ||||||||| ||||||||||||||||||  | || ||||||||| ||||| |   ||||||||| ||| ||||||||||||||    
T  37302174 cataagtataagagattagttagaaaggaagtcattggtaaggtgacacatatgcaaaatgtaggttagaatacatgtatata 37302256  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 14755807 - 14755767
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  14755807 tgtagcttagaatacatgtatatagagatagagatagagat 14755767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 44393567 - 44393523
Alignment:
Q  71 aaaatgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||    
T  44393567 aaaatgtagtttaaaatacatatatatagagatagagatagagat 44393523  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 47234008 - 47234038
Alignment:
Q  16 cataagtatgagagattagttagaaaggggg 46  Q
    |||||||||||||||||||||||||||||||    
T  47234008 cataagtatgagagattagttagaaaggggg 47234038  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 18882329 - 18882289
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  18882329 tgtagcttagaatacatgtatatagagatagagatagagat 18882289  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 39623097 - 39623057
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  39623097 tgtagcttaaaatacatgtatatagagatagagatagagat 39623057  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 42332518 - 42332478
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  42332518 tgtagtttataatacatgtatatagagatagagatagagat 42332478  T

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Target: scaffold0316 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 5480 - 5549
Alignment:
Q  35 ttagaaagggggacactggtaaggtaacacacagataaaatgtagcttataatacatgtatatagagata 104  Q
    ||||||||||| ||| ||||||||| ||||| ||  ||||||||| ||| |||||||||||||| |||||    
T  5480 ttagaaaggggaacattggtaaggtgacacataggaaaaatgtaggttagaatacatgtatatatagata 5549  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 50630 - 50590
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  50630 tgtagcttagaatacatgtatatagagatagggatagagat 50590  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 148004 - 148044
Alignment:
Q  75 tgtagcttataatacatgtatatagagatagagatagagat 115  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  148004 tgtagcttagaatacatgtatatagagatagggatagagat 148044  T

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Target: scaffold1521 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1521
Description:

Target: scaffold1521; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 144 - 107
Alignment:
Q  80 cttataatacatgtatatagagatagagatagagattg 117  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  144 cttagaatacatgtagatagagatagagatagagattg 107  T

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Target: scaffold0152 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 30575 - 30612
Alignment:
Q  80 cttataatacatgtatatagagatagagatagagattg 117  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  30575 cttagaatacatgtagatagagatagagatagagattg 30612  T

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Target: scaffold0152; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 31366 - 31403
Alignment:
Q  80 cttataatacatgtatatagagatagagatagagattg 117  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  31366 cttagaatacatgtagatagagatagagatagagattg 31403  T

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