View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15247_low_4 (Length: 532)

Name: NF15247_low_4
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15247_low_4
NF15247_low_4
[»] chr8 (9 HSPs)
chr8 (20-514)||(39851438-39851919)
chr8 (61-255)||(38634473-38634665)
chr8 (334-489)||(38451793-38451962)
chr8 (336-490)||(38634710-38634876)
chr8 (81-145)||(38452113-38452177)
chr8 (334-373)||(34543461-34543500)
chr8 (259-303)||(38451967-38452011)
chr8 (334-373)||(34914589-34914628)
chr8 (197-255)||(38452030-38452087)
[»] chr4 (2 HSPs)
chr4 (178-489)||(44476077-44476419)
chr4 (92-146)||(44476023-44476077)
[»] chr6 (1 HSPs)
chr6 (259-368)||(14903435-14903548)
[»] chr5 (2 HSPs)
chr5 (259-368)||(2999633-2999752)
chr5 (318-368)||(7432421-7432471)
[»] chr2 (1 HSPs)
chr2 (318-362)||(32706334-32706378)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 514
Target Start/End: Original strand, 39851438 - 39851919
Alignment:
Q  20 ttattttatttatcttattat-cactagcactaattctcatcaaacatctcagcatgttgagtgttaaaggtgacaaacatcttattcacatttttcgtt 118  Q
    ||||||||||||||||||||| ||||||||||||||| ||  ||||||||| || |||||  | ||| | |||||| |||||||||||||||||| ||||    
T  39851438 ttattttatttatcttattattcactagcactaattcacaaaaaacatctcggcgtgttggatattagaagtgacagacatcttattcacatttt-cgtt 39851536  T
Q  119 tggttgagacttcaaatcattcatcattgttacctataataggacaagtcttttaactctattcctttcctagcatgataacttgag----attccttgt 214  Q
    | |||||||||||||| ||||||||||  || |||||                |||||||||| ||||| |||||||||| ||||||    |||||||||    
T  39851537 ttgttgagacttcaaaacattcatcatgattccctat----------------taactctatttctttcatagcatgatagcttgagtgaaattccttgt 39851620  T
Q  215 agtttaattggttgtatgattgttgatttttaatgcttgcttactggtattcttgttgcaagttttcctttgtgcatgagatccttgttttattaactta 314  Q
    |||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39851621 agtt-agttggttgtgtgattgttgatttttaatgcttgcttactggtattcttgttgcaagttttcctttgtgcatgagatccttgttttattaactta 39851719  T
Q  315 gggagcttgatgtaatttttagcttcattacatagttaaatcattgaacaccttgatgagcacattaatattaaaaagtggaaatctgattggtttcaat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39851720 gggagcttgatgtaatttttagcttcattacatagttaaatcattgaacaccttgatgagcacattaatattaaaaagtggaaatctgattggtttcaat 39851819  T
Q  415 ttcttttgagttctcactcataaaactgataatttagtcccattcaagagaatgctgaggttataaaacatcaacgaatgtgaactcataaggcttgttt 514  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39851820 ttctgctgagttctcactcataaaactgataatttagtcccattcaagagaatgctgaggttataaaacatcaacgaatgtgaactcataaggcttgttt 39851919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 255
Target Start/End: Original strand, 38634473 - 38634665
Alignment:
Q  61 aaacatctcagcatgttgagtgttaaaggtgacaaacatcttattcacattttt--cgtttggttgagacttcaaatcattcatcattgttacctataat 158  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  | ||| ||| |||||||||| ||||||||| || | |||||| |    
T  38634473 aaacatctcagcatgttgaatgttagaggtgacaaacatcttattcacattttttccatttagtttagacttcaaaacattcatca-tgattcctatact 38634571  T
Q  159 aggacaagtcttttaactctattcctttcctagcatgataacttgagattccttgtagtttaattggttgtatgattgttgatttttaatgcttgct 255  Q
    || |||||||||||||||||| ||||||  |||||| |||||||| |||||||||||| |||   |||||  |||||||||||||||||||||||||    
T  38634572 agaacaagtcttttaactctactccttttatagcataataacttgtgattccttgtag-ttagcaggttg--tgattgttgatttttaatgcttgct 38634665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 489
Target Start/End: Complemental strand, 38451962 - 38451793
Alignment:
Q  334 tagcttcattacatagttaaatcattgaacaccttgatgagca-----------cattaatattaaaaagtggaaatctgattggtttcaatttcttttg 422  Q
    ||||||||||||||||||||||||  ||||| |||||||||||           |||||| ||||||||||||||||||||||||||||| |||||| |     
T  38451962 tagcttcattacatagttaaatcaccgaacatcttgatgagcaatttttgtcaacattaacattaaaaagtggaaatctgattggtttcactttcttcta 38451863  T
Q  423 ag-ttctca--ctcataaaactgataatttagtcccattcaagagaatgctgaggttataaaacatcaac 489  Q
    || ||||||  ||||||||||||| ||||||  | |||| |||||||||| |||| || |||||||||||    
T  38451862 agtttctcactctcataaaactgagaatttatgctcatttaagagaatgccgaggctaaaaaacatcaac 38451793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 490
Target Start/End: Original strand, 38634710 - 38634876
Alignment:
Q  336 gcttcattacatagttaaatcattgaacaccttgatgagca-----------cattaatattaaaaagtggaaatctgattggtttcaatttcttttgag 424  Q
    |||||||||||||||||||||||  ||||||||||||||||           ||||||  |||||||| ||||||||||| || |||| ||||||  |||    
T  38634710 gcttcattacatagttaaatcatcaaacaccttgatgagcattttttgtcaacattaacgttaaaaagaggaaatctgatagg-ttcactttcttcagag 38634808  T
Q  425 ttctca--ctcataaaactgataatttagtcccattcaagagaatgctgaggttataaaacatcaacg 490  Q
    ||||||  ||||| ||||||| ||||||| | |||| ||| |||||| ||||||| || |||||||||    
T  38634809 ttctcactctcatcaaactgagaatttaggctcatttaagtgaatgccgaggttacaagacatcaacg 38634876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 38452177 - 38452113
Alignment:
Q  81 tgttaaaggtgacaaacatcttattcacatttttcgtttggttgagacttcaaatcattcatcat 145  Q
    ||||| |||||||||||||||||||||||||||  |||| ||| ||||||||||  |||||||||    
T  38452177 tgttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcat 38452113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 373
Target Start/End: Complemental strand, 34543500 - 34543461
Alignment:
Q  334 tagcttcattacatagttaaatcattgaacaccttgatga 373  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  34543500 tagcttcattacatggttaaatcattgaacaccttgatga 34543461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 38452011 - 38451967
Alignment:
Q  259 tggtattcttgttgcaagttttcctttgtgcatgagatccttgtt 303  Q
    |||| |||||||||||||||||||||||||||  |||||||||||    
T  38452011 tggttttcttgttgcaagttttcctttgtgcactagatccttgtt 38451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 373
Target Start/End: Complemental strand, 34914628 - 34914589
Alignment:
Q  334 tagcttcattacatagttaaatcattgaacaccttgatga 373  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  34914628 tagcttcattacatggttaaatcattgaacaccttaatga 34914589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 38452087 - 38452030
Alignment:
Q  197 taacttgagattccttgtagtttaattggttgtatgattgttgatttttaatgcttgct 255  Q
    |||||| ||||||||| ||||| | |||||||| |||||||||||||||||||| ||||    
T  38452087 taacttaagattccttatagtt-agttggttgtgtgattgttgatttttaatgcctgct 38452030  T

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Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 178 - 489
Target Start/End: Original strand, 44476077 - 44476419
Alignment:
Q  178 tattcctttcctagcatgataacttgagattccttgtagtttaattggttgtatgattgttgatttttaatgcttgcttac---------------tggt 262  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  |               | ||    
T  44476077 tattcctttcctagcatgaattcttgagattccttgtagtttagttggttgtatcattgttgatttttaatgcttgctaccaaattcatcattgagttgt 44476176  T
Q  263 attcttgttgcaagttttcctttgtgcatgagatccttgtttt---attaacttagggagcttgatgtaatttttagcttcattacatagttaaatcatt 359  Q
    ||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||    
T  44476177 attcttgttgcaagttttcctttgtgcatgagatccttactttgttattaacttagggagctggatgcaatttgtagctgcattacatagttaaatcatt 44476276  T
Q  360 gaacaccttgatgagc---------acatt--aatattaaaaagtggaaatctgattggtttcaatttcttttgagttctcact--cataaaactgataa 446  Q
    ||||||||||||||||         |||||   |||  ||||||||||||||| |||||||||| |||||| ||||||||||||  | ||||||||| ||    
T  44476277 gaacaccttgatgagcagtttgtctacatttacataaaaaaaagtggaaatcttattggtttcactttcttctgagttctcacttacctaaaactgagaa 44476376  T
Q  447 tttagtcccattcaagagaatgctgaggttataaaacatcaac 489  Q
    || ||   |||  ||||||| || || ||||||||||||||||    
T  44476377 ttcagattcatgtaagagaacgccgatgttataaaacatcaac 44476419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 44476023 - 44476077
Alignment:
Q  92 acaaacatcttattcacatttttcgtttggttgagacttcaaatcattcatcatt 146  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  44476023 acaaacatcttattcatattttccgtttagttgagacttcaaatcattcatcatt 44476077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 368
Target Start/End: Complemental strand, 14903548 - 14903435
Alignment:
Q  259 tggtattcttgttgcaagttttcctttgtgcatgagatccttgttttattaacttaggg----agcttgatgtaatttttagcttcattacatagttaaa 354  Q
    ||||||||||||||||| ||| ||||||||||||||||| || |||  |||||| || |    ||||||||| ||||| ||||||||||||||| |||||    
T  14903548 tggtattcttgttgcaattttacctttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaa 14903449  T
Q  355 tcattgaacacctt 368  Q
    ||| |||| |||||    
T  14903448 tcactgaatacctt 14903435  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 259 - 368
Target Start/End: Original strand, 2999633 - 2999752
Alignment:
Q  259 tggtattcttgttgcaagttttcctttgtgcatgagatccttgtttta------ttaacttaggg----agcttgatgtaatttttagcttcattacata 348  Q
    ||||||||||||||||| ||||||||||||||||||||| || |||||      |||||| || |    ||||||||| ||||| |||||||||||||||    
T  2999633 tggtattcttgttgcaatttttcctttgtgcatgagatcattattttattttatttaactcagagagctagcttgatgcaatttctagcttcattacata 2999732  T
Q  349 gttaaatcattgaacacctt 368  Q
     ||||||||||||| |||||    
T  2999733 tttaaatcattgaatacctt 2999752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 7432421 - 7432471
Alignment:
Q  318 agcttgatgtaatttttagcttcattacatagttaaatcattgaacacctt 368  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||||| |||||    
T  7432421 agcttgatgcaatttgtagcttcattacatattgaaatcattgaatacctt 7432471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 32706334 - 32706378
Alignment:
Q  318 agcttgatgtaatttttagcttcattacatagttaaatcattgaa 362  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||    
T  32706334 agcttgatgcaatttctagcttcattacatatttaaatcattgaa 32706378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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