View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15247_low_8 (Length: 390)
Name: NF15247_low_8
Description: NF15247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15247_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 36222391 - 36222763
Alignment:
| Q |
18 |
atttgaaattccgagaaccaattcaaacatcaaaaacctactatgactatgttgctgaaatatgatgaacttgatttaattttgtctttgcagtattagt |
117 |
Q |
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| T |
36222391 |
atttgaaattccgagaaccaattcaaacatcaaaaacctactatgactatgttgctgaaatatgatgaacttgatttaattttgtctttgcagtattagt |
36222490 |
T |
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| Q |
118 |
tgtgaagtgggaagaaataaaagcaactaaactaagatatgccannnnnnnnatggtgaaaaaagttgaatgtgtatatgaactgaagaacctaccaaga |
217 |
Q |
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| T |
36222491 |
tgtgaagtaggaagaaataaaagcaactaaactaagatatgccattttttttatggtgaaaaaagttgaatgtgtatatgaactgaagaacctaccaaga |
36222590 |
T |
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| Q |
218 |
tagccccaagagggtcaagccaccaatagaatttgatggctagcactgccgtggctagaccaattgagtttgtaatgacatcaaagaaatggtcttgagc |
317 |
Q |
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| T |
36222591 |
tagccccaagagggtcaagccaccaatagaatttgatggctagcactgccgtggctagaccaatcgagtttgtaatgacatcaaagaaatggtcttgagc |
36222690 |
T |
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| Q |
318 |
ataggctctaactatttcatttttgaacctgcgacagtatgtcatcagcccaatttttacaactgtggctgtc |
390 |
Q |
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| T |
36222691 |
ataggctctaactatttcatttttgaacctgcgacagtatgtcatcagcccaatttttacaactgtggctgtc |
36222763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 6577878 - 6577913
Alignment:
| Q |
355 |
tatgtcatcagcccaatttttacaactgtggctgtc |
390 |
Q |
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| T |
6577878 |
tatgtcatgagcccaatttttacaactgtggctgtc |
6577913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 276650 - 276685
Alignment:
| Q |
355 |
tatgtcatcagcccaatttttacaactgtggctgtc |
390 |
Q |
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| T |
276650 |
tatgtcatgagcccaatttttacaactgtggctgtc |
276685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 871559 - 871524
Alignment:
| Q |
355 |
tatgtcatcagcccaatttttacaactgtggctgtc |
390 |
Q |
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| T |
871559 |
tatgtcatgagcccaatttttacaactgtggctgtc |
871524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 29709525 - 29709560
Alignment:
| Q |
355 |
tatgtcatcagcccaatttttacaactgtggctgtc |
390 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
29709525 |
tatgtcatgagcccaatttttacaactgtggctgtc |
29709560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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