View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15248_high_3 (Length: 406)
Name: NF15248_high_3
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15248_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 43024395 - 43024014
Alignment:
| Q |
7 |
gcaacacagacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggcgaatgtggatgtgatcacagccat |
106 |
Q |
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| T |
43024395 |
gcaacccaaacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggcgaatgtggatgtgatcacagctat |
43024296 |
T |
|
| Q |
107 |
gaattcattccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctcgacaataatcaagtctctgagttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43024295 |
gaattcattccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctcgacaataatcaagtctctgagttt |
43024196 |
T |
|
| Q |
207 |
aacaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccga |
306 |
Q |
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| T |
43024195 |
aacaaagataagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccga |
43024096 |
T |
|
| Q |
307 |
aagtgaaatgtgacctcaaagttcctttgaattctaagaatacctccactcagcttgtgcccaccaagtgcgatgctgatct |
388 |
Q |
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| T |
43024095 |
aagtgaaatgtgacctcaaagttcctttgaattctaagaataccttcactcagcttgtgcccaccaagtgcgatgttgatct |
43024014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 43049537 - 43049210
Alignment:
| Q |
16 |
acaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggcgaatgtggatgtgatcacagccatgaattcatt |
115 |
Q |
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| T |
43049537 |
acaaaaaactcaacatctattatgataaagtggaggcacgagcattctacgaagggtcaaggtttgccaatgttgatgtgatcacacacatgaactcatt |
43049438 |
T |
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| Q |
116 |
ccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctcgacaataatcaagtctctgagtttaacaaagat |
215 |
Q |
| |
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||||||| ||||||||||| | || ||||| | ||||||||||||||||| | || ||||||||| |||||||||| |||||||||||||| |
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| T |
43049437 |
tcgccaatacaagaagagcagcaaccccatgagtgctgttttctcaggacaacatgttttcgtgctcgacagcgatcaagtctccgagtttaacaaagac |
43049338 |
T |
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| Q |
216 |
aagagtgttgaagtttatgatatctatgtgaaactctacttcgaaattagattcagactcgggaatgtgatatttggtcgtatcaatccgaaagtgaaat |
315 |
Q |
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||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| ||| || |||||| ||| | ||| || || ||||||| |
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| T |
43049337 |
aagagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttggggatttgatatcgggtgattacaagcctaaggtgaaat |
43049238 |
T |
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| Q |
316 |
gtgacctcaaagttcctttgaattctaa |
343 |
Q |
| |
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||||| ||||||||||||||| |||||| |
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| T |
43049237 |
gtgacttcaaagttcctttgagttctaa |
43049210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 43062322 - 43062081
Alignment:
| Q |
16 |
acaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggcgaatgtggatgtgatcacagccatgaattcatt |
115 |
Q |
| |
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|||||||||| | | |||||||||| |||||||| || ||||| ||||| ||||| || || || || ||||| |||||||||||| |||||| || || |
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| T |
43062322 |
acaaaaaacttagcatctattacgataaagttgaagctcgagctttctatgaaggatcgagatttgcaaatgtcgatgtgatcacacacatgaactcgtt |
43062223 |
T |
|
| Q |
116 |
ccgccaatttaagaagagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctcgacaataatcaagtctctgagtttaacaaagat |
215 |
Q |
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| T |
43062222 |
tcgccaaaacaagaaaactagtgaccccatgagtggcgttttcttaggacaaaagttgttggtactcgacaatgatcaagtctcggaattcagcaaagac |
43062123 |
T |
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| Q |
216 |
aagagtgttgaagtttatgatatctatgtgaaactctacttc |
257 |
Q |
| |
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|||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
43062122 |
aagagtgttggagtttatggtatctatgtgaagctctacttc |
43062081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 256
Target Start/End: Complemental strand, 43055056 - 43054831
Alignment:
| Q |
31 |
tctattacgacaaagttgaggcacgagcattctacgaaggttcaaggttggcgaatgtggatgtgatcacagccatgaattcattccgccaatttaagaa |
130 |
Q |
| |
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|||| |||||||||||||| || | ||||||||| ||||| || ||||| | ||||| ||||| |||||| |||||| ||||| || ||| ||||| |
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| T |
43055056 |
tctactacgacaaagttgaagctcaagcattctatgaagggtcgaggttttctaatgtagatgttatcacacacatgaactcatttcgtcaagacaagaa |
43054957 |
T |
|
| Q |
131 |
gagcagtgatcctatgagcggtgttttctcaggacaacggttattgatgctcgacaataatcaagtctctgagtttaacaaagataagagtgttgaagtt |
230 |
Q |
| |
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|| || |||| |||| ||||||||| || || ||| ||||||||||||||||| ||||| | || ||||| ||||||||||||| ||||| |||| |
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| T |
43054956 |
gaatagcaatcccatgaccggtgttttttctggtcaaaaactattgatgctcgacaatgatcaaatttcggagttcaacaaagataagaatgttggagtt |
43054857 |
T |
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| Q |
231 |
tatgatatctatgtgaaactctactt |
256 |
Q |
| |
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||||||||||||||||| |||||||| |
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| T |
43054856 |
tatgatatctatgtgaagctctactt |
43054831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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