View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15248_high_4 (Length: 378)

Name: NF15248_high_4
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15248_high_4
NF15248_high_4
[»] chr2 (6 HSPs)
chr2 (18-368)||(2360121-2360474)
chr2 (49-98)||(36114581-36114630)
chr2 (49-105)||(11513861-11513917)
chr2 (51-97)||(14220880-14220926)
chr2 (49-103)||(43199377-43199431)
chr2 (57-105)||(1625871-1625919)
[»] chr7 (5 HSPs)
chr7 (49-105)||(1417227-1417283)
chr7 (49-83)||(30180014-30180048)
chr7 (49-105)||(9527141-9527197)
chr7 (49-105)||(39967883-39967939)
chr7 (49-105)||(48470007-48470063)
[»] chr6 (9 HSPs)
chr6 (49-105)||(9093607-9093663)
chr6 (49-103)||(2112164-2112217)
chr6 (52-105)||(415270-415323)
chr6 (144-189)||(13907972-13908016)
chr6 (49-102)||(28621164-28621217)
chr6 (49-105)||(2735032-2735088)
chr6 (49-105)||(4248921-4248977)
chr6 (49-105)||(8147665-8147721)
chr6 (49-85)||(24836270-24836306)
[»] chr5 (5 HSPs)
chr5 (47-107)||(10272480-10272540)
chr5 (50-105)||(6587158-6587213)
chr5 (49-104)||(9202800-9202855)
chr5 (48-105)||(12425533-12425590)
chr5 (49-85)||(12595811-12595847)
[»] chr3 (10 HSPs)
chr3 (49-105)||(37788823-37788879)
chr3 (49-106)||(10101526-10101583)
chr3 (49-106)||(10212451-10212508)
chr3 (49-107)||(10357396-10357454)
chr3 (51-105)||(14145877-14145931)
chr3 (56-105)||(21367637-21367686)
chr3 (49-85)||(15304418-15304454)
chr3 (49-105)||(30956677-30956733)
chr3 (49-105)||(30972489-30972545)
chr3 (49-105)||(36783385-36783441)
[»] chr1 (9 HSPs)
chr1 (49-105)||(49888730-49888786)
chr1 (49-105)||(28467358-28467414)
chr1 (49-104)||(36070213-36070268)
chr1 (49-83)||(38160076-38160110)
chr1 (56-105)||(17269220-17269269)
chr1 (49-105)||(5592736-5592792)
chr1 (47-103)||(7218127-7218183)
chr1 (46-82)||(8081847-8081883)
chr1 (49-105)||(27738231-27738287)
[»] chr4 (5 HSPs)
chr4 (49-104)||(25885822-25885877)
chr4 (49-103)||(3155566-3155620)
chr4 (53-103)||(6927546-6927596)
chr4 (49-105)||(17884031-17884087)
chr4 (49-105)||(52746891-52746947)
[»] scaffold0024 (2 HSPs)
scaffold0024 (51-103)||(27541-27593)
scaffold0024 (18-83)||(21351-21420)
[»] chr8 (4 HSPs)
chr8 (51-105)||(2595048-2595102)
chr8 (55-105)||(7514547-7514597)
chr8 (49-105)||(34770855-34770911)
chr8 (49-105)||(41336696-41336752)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 2360474 - 2360121
Alignment:
Q  18 atgataagcacttatgtaaacatattttcataaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagccaacttcataag 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2360474 atgataagcacttatgtaaatatattttcataaaagataaaataaagttcaattgttttcgcataaacaacaagttgttttcataagccaacttcataag 2360375  T
Q  118 ttcgctcaaataatatcaaaatttaaaagtgcttatgctagtagaaaagttcaactaagtctaattcaaacagatctcatatatatcaatcacaaagcag 217  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2360374 ttcgctcaaataatatcaaaattcaaaggtgcttatgctagtagaaaagttcaactaagtctaattcaaacagatctcatatatatcaatcacaaagcag 2360275  T
Q  218 ccagggaaaacgaaaacaacagcatgcatgcggtaaaaacattgaagatttattaaatagatgatcctttcaatggaaatgtaaatgatnnnnnnnnnnn 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  2360274 ccagggaaaacgaaaacaacagcatgcatgcggtaaaaacattgaagatttattaaatagatgatcctttcaatggaaatgtaaatgataaaaaagaaaa 2360175  T
Q  318 nggcatgaaaa---cagaagaagaagacgaagttagaatatttacttacctttg 368  Q
     ||||||||||   || || ||||||| ||||||||||||||||||||||||||    
T  2360174 aggcatgaaaaaggcaaaaaaagaagaagaagttagaatatttacttacctttg 2360121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 36114630 - 36114581
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgtttt 98  Q
    |||||||||||||||||| ||||||||| |||||| ||| ||||||||||    
T  36114630 aaaagataaaataaagttaaattgtttttgtataagcaataagttgtttt 36114581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 11513861 - 11513917
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  |||||||||| ||||| | | |||||||||||||||||    
T  11513861 aaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagc 11513917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 14220926 - 14220880
Alignment:
Q  51 aagataaaataaagttcaattgttttcgtataaacaacaagttgttt 97  Q
    |||||||||||||||| || |||||| |||||||||| |||||||||    
T  14220926 aagataaaataaagttaaactgttttggtataaacaataagttgttt 14220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 43199377 - 43199431
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 103  Q
    |||||||||||||||||| |||| | ||||||||| | | |||||||||||||||    
T  43199377 aaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataa 43199431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 1625871 - 1625919
Alignment:
Q  57 aaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||| ||||||||||||||||   | |||||||||||||||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataagc 1625919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 1417227 - 1417283
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  |||||||||| ||||| ||| |||||||||||||||||    
T  1417227 aaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataagc 1417283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 30180014 - 30180048
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataa 83  Q
    |||||||||||||||||| ||||||||||||||||    
T  30180014 aaaagataaaataaagttaaattgttttcgtataa 30180048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 9527197 - 9527141
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||| ||||||||  || ||||||| ||||||| | |||||||||||||||||    
T  9527197 aaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagc 9527141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 39967883 - 39967939
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    ||||||||||||||| || |||||||||||||  | | | |||||||||||||||||    
T  39967883 aaaagataaaataaacttaaattgttttcgtactagctataagttgttttcataagc 39967939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 48470007 - 48470063
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||| ||||| ||||||||| ||||| |  | |||||||||||||||||    
T  48470007 aaaagataaaattaagttaaattgtttttgtatataatataagttgttttcataagc 48470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 9093663 - 9093607
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| |||||||||||||||| | | ||| |||||||||||||    
T  9093663 aaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagc 9093607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 2112164 - 2112217
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 103  Q
    |||||||||||||||||| ||||| |||| ||||||| | |||||||||||||||    
T  2112164 aaaagataaaataaagttaaattg-tttcatataaactataagttgttttcataa 2112217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 415270 - 415323
Alignment:
Q  52 agataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||| |||||| |||||||||||||||| | | |||||||||| ||||||    
T  415270 agataaaacaaagttaaattgttttcgtataagctataagttgtttttataagc 415323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 13907972 - 13908016
Alignment:
Q  144 aagtgcttatgctagtagaaaagttcaactaagtctaattcaaaca 189  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||    
T  13907972 aagtgcttatgttagtagaaaagttcaaataagtc-aattcaaaca 13908016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 28621217 - 28621164
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcata 102  Q
    |||||||||||||||||| ||||||||| |||||| | ||||| ||||| ||||    
T  28621217 aaaagataaaataaagttaaattgtttttgtataagctacaagatgtttacata 28621164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 2735032 - 2735088
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| |||| |||| |||||| | | ||| |||||||||||||    
T  2735032 aaaagataaaataaagttaaattatttttgtataatctataagctgttttcataagc 2735088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 4248921 - 4248977
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  ||||| ||| |||||||||| ||| ||||||| |||||    
T  4248921 aaaagataaaataaagtcaaattgattttgtataaacaataaggtgttttcctaagc 4248977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 8147665 - 8147721
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| ||||||||| |||||  | | ||| |||||||||||||    
T  8147665 aaaagataaaataaagttgaattgtttttgtatattctaaaagatgttttcataagc 8147721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 24836306 - 24836270
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaac 85  Q
    |||||||||||||||||  ||||||||||||||||||    
T  24836306 aaaagataaaataaagtcaaattgttttcgtataaac 24836270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 10272540 - 10272480
Alignment:
Q  47 ataaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcca 107  Q
    |||||||||||||| ||||  |||||||||||||||| | | |||||||||||||||||||    
T  10272540 ataaaagataaaattaagtcaaattgttttcgtataagctataagttgttttcataagcca 10272480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 6587213 - 6587158
Alignment:
Q  50 aaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||| ||||||| ||||||||||||||||||| | | |||||||||||||||||    
T  6587213 aaagattaaataaacttcaattgttttcgtataagctataagttgttttcataagc 6587158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 9202855 - 9202800
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataag 104  Q
    |||||||||||||||||| |||||||||| ||||| ||| ||| ||||||||||||    
T  9202855 aaaagataaaataaagttaaattgttttcatataagcaataagctgttttcataag 9202800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 12425533 - 12425590
Alignment:
Q  48 taaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    ||||||||||||||||||| |||||||||||||||| | | ||| |||||||| ||||    
T  12425533 taaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagc 12425590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 12595847 - 12595811
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaac 85  Q
    |||||||||||||||||| |||||||||| |||||||    
T  12595847 aaaagataaaataaagttaaattgttttcatataaac 12595811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 37788823 - 37788879
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    ||||||||||||||||| ||||| ||||||||||| | | |||||||||||||||||    
T  37788823 aaaagataaaataaagtccaattattttcgtataatctataagttgttttcataagc 37788879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 10101583 - 10101526
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcc 106  Q
    |||||||||||||||||| |||||||||| |||||   | ||||||||||||||||||    
T  10101583 aaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataagcc 10101526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 10212508 - 10212451
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcc 106  Q
    |||||||||||||||||| |||||||||| |||||   | ||||||||||||||||||    
T  10212508 aaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataagcc 10212451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 10357396 - 10357454
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcca 107  Q
    |||||||||||||| ||| |||| ||||| |||||   |||||||||||||||||||||    
T  10357396 aaaagataaaataatgttaaatttttttcatataagatacaagttgttttcataagcca 10357454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 14145877 - 14145931
Alignment:
Q  51 aagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||| |||||||||||||||  | | ||||| |||||||||||    
T  14145877 aagataaaataaagttaaattgttttcgtatatgctataagttattttcataagc 14145931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 21367637 - 21367686
Alignment:
Q  56 aaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    ||||||||||| ||||||||||||||||   | |||||||||||||||||    
T  21367637 aaaataaagttaaattgttttcgtataatgtataagttgttttcataagc 21367686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 15304454 - 15304418
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaac 85  Q
    |||||||||||||||||| |||||||||| |||||||    
T  15304454 aaaagataaaataaagttaaattgttttcatataaac 15304418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 30956733 - 30956677
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| ||||||||| |||||  | | |||||||||||| ||||    
T  30956733 aaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagc 30956677  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 30972545 - 30972489
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| ||||||||| |||||  | | |||||||||||| ||||    
T  30972545 aaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagc 30972489  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 36783441 - 36783385
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  |||||||||| ||||||| |  || |||||||||||||    
T  36783441 aaaagataaaataaagtaaaattgttttcatataaactattagctgttttcataagc 36783385  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 49888730 - 49888786
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| |||||||||||||||| | |  ||||||||||||||||    
T  49888730 aaaagataaaataaagtttaattgttttcgtataagctattagttgttttcataagc 49888786  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 28467414 - 28467358
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  |||| ||||| ||||| | |||||||||||||||||||    
T  28467414 aaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataagc 28467358  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 36070213 - 36070268
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataag 104  Q
    |||||||||||||||||| |||||| |||| |||| | | ||||||||||||||||    
T  36070213 aaaagataaaataaagttaaattgtcttcggataagctataagttgttttcataag 36070268  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 38160110 - 38160076
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataa 83  Q
    |||||||||| ||||||||||||||||||||||||    
T  38160110 aaaagataaactaaagttcaattgttttcgtataa 38160076  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 17269220 - 17269269
Alignment:
Q  56 aaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    ||||||||||  |||||||||| ||||| ||| |||||||||||||||||    
T  17269220 aaaataaagtcaaattgttttcatataagcaataagttgttttcataagc 17269269  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 5592792 - 5592736
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  ||||||| || ||||| | | |||||||||||||||||    
T  5592792 aaaagataaaataaagtcgaattgttgtcatataagctataagttgttttcataagc 5592736  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 7218183 - 7218127
Alignment:
Q  47 ataaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 103  Q
    ||||||| |||||||||||  |||||||||| ||||| | | |||||||||||||||    
T  7218183 ataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 8081847 - 8081883
Alignment:
Q  46 cataaaagataaaataaagttcaattgttttcgtata 82  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  8081847 cataaaagataaaataaagttaaattgtttttgtata 8081883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 27738287 - 27738231
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  |||||||||| ||||| | | || ||||||||||||||    
T  27738287 aaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataagc 27738231  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 25885822 - 25885877
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataag 104  Q
    |||||||||||||||||| |||||||||||| ||| | | ||||||||||||||||    
T  25885822 aaaagataaaataaagttaaattgttttcgtgtaagctataagttgttttcataag 25885877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 3155566 - 3155620
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 103  Q
    |||||||||||||||||| ||||||||| ||| || | ||||| |||||||||||    
T  3155566 aaaagataaaataaagttaaattgtttttgtacaagctacaagctgttttcataa 3155620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 6927596 - 6927546
Alignment:
Q  53 gataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 103  Q
    |||||||||||||| |||||||||| | ||||| | |||||||||||||||    
T  6927596 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 6927546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 17884031 - 17884087
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| ||||||||| ||||||   |  ||||||||||||||||    
T  17884031 aaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataagc 17884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 52746947 - 52746891
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||| ||||||||| || ||| | | ||| |||||||||||||    
T  52746947 aaaagataaaataaagttaaattgtttttgtgtaagccataagctgttttcataagc 52746891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 27541 - 27593
Alignment:
Q  51 aagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 103  Q
    |||||||||||||||  |||||||||| ||||||| | |||||||||||||||    
T  27541 aagataaaataaagtcaaattgttttcatataaactataagttgttttcataa 27593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 21420 - 21351
Alignment:
Q  18 atgataagcacttatgta-aacatattttcata---aaagataaaataaagttcaattgttttcgtataa 83  Q
    |||||||||||||||||| ||  |||||| |||   ||||||||||||||||| ||||||||||||||||    
T  21420 atgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataa 21351  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 2595102 - 2595048
Alignment:
Q  51 aagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||| |||||||||||||  | | | |||||||||||||||||    
T  2595102 aagataaaataaagttaaattgttttcgtactagccataagttgttttcataagc 2595048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 7514547 - 7514597
Alignment:
Q  55 taaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||| |||||||||||||| ||||| | ||||| |||||||||||||    
T  7514547 taaaataatgttcaattgttttcatataagctacaagctgttttcataagc 7514597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 34770855 - 34770911
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    |||||||||||||||||  |||||||||| | ||| | | |||||||||||||||||    
T  34770855 aaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagc 34770911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 41336752 - 41336696
Alignment:
Q  49 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 105  Q
    ||||||||||||| |||  |||||||||| ||||||| | || ||||||||||||||    
T  41336752 aaaagataaaatatagtcaaattgttttcatataaactagaacttgttttcataagc 41336696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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