View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15248_low_1 (Length: 659)
Name: NF15248_low_1
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15248_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 80 - 641
Target Start/End: Original strand, 49755383 - 49755953
Alignment:
| Q |
80 |
tctgaactaattcacagaaaccaaacaagagatcaaaccacagattcatcatcccatcgtgataatcctcttccaagaacgagaacaaaca--------- |
170 |
Q |
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| T |
49755383 |
tctgaactaattcacagaaaccaaacaagagatcaaaccacagattcatcatcccatcgtgataatcctcttccaagaacgagaacaaacatcatcaaca |
49755482 |
T |
|
| Q |
171 |
tgcttctaaatcgagtccctttccttctcattggaatagcaatttccactttcttcttccactatctcccttctcggtccactcttccacaacatcatga |
270 |
Q |
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| T |
49755483 |
tgcttctaaatcgagtccctttccttctcattggaatagcaatttccactttcttcttccactatctcccttctcgatccactcttccacaacatcatga |
49755582 |
T |
|
| Q |
271 |
ctcttcgtcgttcgttggaaccgagttaactcttccgactaggcgagttctgttagaggaacacggtagagatgaaagaaaacgaagagttccattggcc |
370 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49755583 |
ctcttcttcgttcgttggaacggagttaactcttccgactaggcgagttcttttagaggaacacggtagagatgaaagaaaacgaagagttccattggcc |
49755682 |
T |
|
| Q |
371 |
gttggattgaaaagcaagagacagaagagagtactggttaccggtggagctggtttcgttggaagtcatcttgttgatcgtttgattgaaagaggtgata |
470 |
Q |
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| T |
49755683 |
gttggattgaaaagcaagagacagaagagagtactggttaccggtggagctggtttcgttggaagtcatcttgtggatcgtttgattgaaagaggtgata |
49755782 |
T |
|
| Q |
471 |
atgtgatcgtgattgataattattttactggaaggaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatgatgttgttga |
570 |
Q |
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| T |
49755783 |
atgtgatcgtgattgataattattttactggaaggaaagagaatgttgttcatcatattggtaatcccaattttgaacttattagacatgatgttgttga |
49755882 |
T |
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| Q |
571 |
acctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagttta |
641 |
Q |
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| T |
49755883 |
acctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagttta |
49755953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 461 - 639
Target Start/End: Complemental strand, 39567496 - 39567318
Alignment:
| Q |
461 |
agaggtgataatgtgatcgtgattgataattattttactggaaggaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatg |
560 |
Q |
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| T |
39567496 |
agaggggatagtgtgattgttgttgataatttcttcaccggtagaaaagagaacgttatgcatcattttggtaatccgagatttgagcttattcgacacg |
39567397 |
T |
|
| Q |
561 |
atgttgttgaacctattcttcttgaagttgatcagatctatcacttggcttgccctgcttcccctgttcattacaagtt |
639 |
Q |
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| T |
39567396 |
acgtcgttgagcctcttcttcttgaagttgatcagatctatcatcttgcttgtcctgcttctcctgttcattacaagtt |
39567318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 405 - 638
Target Start/End: Original strand, 29126946 - 29127179
Alignment:
| Q |
405 |
tggttaccggtggagctggtttcgttggaagtcatcttgttgatcgtttgattgaaagaggtgataatgtgatcgtgattgataattattttactggaag |
504 |
Q |
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||||||||||||| |||||||| |||||||||||||| |||||| ||||||| ||||| || |||| || || |||||||||| ||||||||| || |
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| T |
29126946 |
tggttaccggtggtgctggttttgttggaagtcatctggttgataagttgattggtagagggaatgatgttattgttattgataatttttttactggtag |
29127045 |
T |
|
| Q |
505 |
gaaagagaacgttgttcatcatcttggtaatcccaattttgaacttattagacatgatgttgttgaacctattcttcttgaagttgatcagatctatcac |
604 |
Q |
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| T |
29127046 |
gaaagagaatttggttcatttgtttgggaaccctaggtttgagttaattcgtcatgatgttgttgatccgattttgcttgaggttgatcagatctatcat |
29127145 |
T |
|
| Q |
605 |
ttggcttgccctgcttcccctgttcattacaagt |
638 |
Q |
| |
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| || || |||||||| ||||||||||| |||| |
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| T |
29127146 |
cttgcctgtcctgcttcacctgttcattataagt |
29127179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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