View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15248_low_10 (Length: 337)
Name: NF15248_low_10
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15248_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 108 - 304
Target Start/End: Complemental strand, 32738080 - 32737879
Alignment:
| Q |
108 |
ggtaaataaaattcaattttcaagtcagaggttccgggctttatgtgatgagctcgagatacaactaaagtttgcctcagttgtacacgcccaagcaaac |
207 |
Q |
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| T |
32738080 |
ggtaaataaaattcaatttgcaagtcagaggttcagggctttctgtgatgagctcgagatacaactaaagtttgcctcagttgaacacgcccaagcaaac |
32737981 |
T |
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| Q |
208 |
gagtaggttgaataagcaaacaaggtcatcctcaacagtttgagg-----aagagcctttatcagtccaaaatagaatggactgtggagttaaaatcatt |
302 |
Q |
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| T |
32737980 |
gagtaggttgaataagcaaacaaggtcatcctcaacagtttgaggaagctaagagcctttatcagtccaaaatagaatggactgtggagttaaaatcatt |
32737881 |
T |
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| Q |
303 |
at |
304 |
Q |
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|| |
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| T |
32737880 |
at |
32737879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 32738208 - 32738106
Alignment:
| Q |
9 |
gaaatgaaacatctttgatgctgagacacaaccttagcagttatgtccactattacagtgaaaaaggtgcacaagtttatttcaagaattcagtttactg |
108 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32738208 |
gaaatgaaacatctttgatgctgagacacactcttagcagttatgtccactattacagtgaaaaaggtgcacaagtttatttcaagaattcagtttactg |
32738109 |
T |
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| Q |
109 |
gta |
111 |
Q |
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||| |
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| T |
32738108 |
gta |
32738106 |
T |
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Back To:
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