View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15248_low_11 (Length: 221)

Name: NF15248_low_11
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15248_low_11
NF15248_low_11
[»] chr2 (4 HSPs)
chr2 (17-198)||(32256672-32256850)
chr2 (17-114)||(5305787-5305883)
chr2 (17-192)||(42472048-42472222)
chr2 (37-117)||(41534571-41534651)
[»] chr8 (6 HSPs)
chr8 (17-198)||(29909502-29909682)
chr8 (27-192)||(5938024-5938190)
chr8 (17-119)||(6635979-6636080)
chr8 (17-162)||(6628180-6628321)
chr8 (65-119)||(18421734-18421788)
chr8 (66-198)||(8109506-8109635)
[»] chr1 (2 HSPs)
chr1 (17-197)||(35362197-35362374)
chr1 (17-119)||(13641105-13641206)
[»] chr4 (3 HSPs)
chr4 (17-198)||(50689593-50689772)
chr4 (27-197)||(31763459-31763626)
chr4 (17-137)||(13611117-13611235)
[»] chr7 (6 HSPs)
chr7 (17-197)||(27157286-27157463)
chr7 (17-114)||(26425490-26425586)
chr7 (19-114)||(3525757-3525851)
chr7 (17-137)||(9626011-9626129)
chr7 (19-56)||(21523985-21524022)
chr7 (69-137)||(3406397-3406465)
[»] chr6 (4 HSPs)
chr6 (17-119)||(15055636-15055737)
chr6 (17-119)||(22300070-22300171)
chr6 (17-119)||(16463801-16463902)
chr6 (19-119)||(22293074-22293173)
[»] chr3 (2 HSPs)
chr3 (20-85)||(54739478-54739542)
chr3 (19-84)||(9798308-9798372)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 32256672 - 32256850
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  32256672 accaagcctcaaaagtacacacaaatcaaataacaatatgagt-atttaatgataacttaacaagctttcaaatagtaagaatctgaaaacaaaatcagc 32256770  T
Q  117 actcaagtaagataaaaatgcttaattaaacttcgatgtgataaaacaatcactaactcaatatgagaatttgaagtaactg 198  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32256771 actcaagtaagataaaaatgcataa--aaacttcgatgtgataaaacaatcactaactcaatatgagaatttgaagtaactg 32256850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 5305787 - 5305883
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatca 114  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||  |||||||||| |||||||||||||||    
T  5305787 accaagcctcaaaagttcacacaaatcaaataacaatatgggt-atttaatgataacttaacaagctttcagacagtaagaaactgaaaacaaaatca 5305883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 42472222 - 42472048
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||| ||||| ||||||||||||||||||||||| || |||||| ||||| |||||||| |||| |||| |||||| |||||||||||||||||    
T  42472222 accaagcctcgaaagttcacacaaatcaaataacaatatgggt-atttaacgataacttaacaagttttcaaacattaagaaactgaaaacaaaatcagc 42472124  T
Q  117 actcaagtaagataaaaatgcttaattaaacttcgatgtgat---aaaacaatcactaactcaatatgagaatttgaag 192  Q
    ||| |||  ||| |||||||| |||  || |||| |||||||   |||| |||||| |||| |||||||||||||||||    
T  42472123 acttaag-cagaaaaaaatgcataa--aatcttcaatgtgatgaaaaaaaaatcaccaacttaatatgagaatttgaag 42472048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 41534651 - 41534571
Alignment:
Q  37 acaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagca 117  Q
    |||||||||||||| ||||||||  |  | |||||| ||||||| ||| | ||||||||||| ||||||||||||||||||    
T  41534651 acaaatcaaataaccatatgagtcttaaagtgataacttaacaaacttccaaacagtaagaacctgaaaacaaaatcagca 41534571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 29909682 - 29909502
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||  |||| |||||| |||||||||||||||||    
T  29909682 accaagcctcaaaagttcacacaaatcaaataacaatatgagt-atttaatgataacttaacaagcttttaaacaataagaaactgaaaacaaaatcagc 29909584  T
Q  117 actcaagtaagataaaaatgcttaattaaacttcgatgtgat--aaaacaatcactaactcaatatgagaatttgaagtaactg 198  Q
    ||| ||| | || |||||||| | |  || |||| |||||||  |||| |||||| |||| ||||||||||||||||| |||||    
T  29909583 acttaagcaggaaaaaaatgcatga--aatcttcaatgtgataaaaaaaaatcaccaacttaatatgagaatttgaaggaactg 29909502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 5938190 - 5938024
Alignment:
Q  27 aaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagcactcaagtaa 126  Q
    |||||| |||||||||| ||||||||||||||  |||| ||||||| ||||||||||||| |||| ||||||  ||||| |||||||| |||| |||||     
T  5938190 aaaagttcacacaaatccaataacaatatgaga-attttatgataacttaacaagctttcaaacaataagaaattgaaagcaaaatcaacacttaagtag 5938092  T
Q  127 gataaaaatgcttaattaaacttcgatgtgat-aaaacaatcactaac---tcaatatgagaatttgaag 192  Q
    || |||||||| |||  || |||| ||||||| |||| ||||||||||   | |||||||||||||||||    
T  5938091 gaaaaaaatgcataa--aatcttcaatgtgataaaaaaaatcactaacttattaatatgagaatttgaag 5938024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6635979 - 6636080
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||   ||| |||||||  ||||||||    
T  6635979 accaagcctcaaaagttcactcaaatcaaataacaatatg-ggtatttaatgataacttaacaagctttcaaacagattgaaactgaaaagtaaatcagc 6636077  T
Q  117 act 119  Q
    |||    
T  6636078 act 6636080  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 6628180 - 6628321
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||| ||||||| ||||| || ||   ||| |||||||  ||||||||    
T  6628180 accaagcctcaaaagttcactcaaatcaaataacaatatg-ggtatttaatgataacttaacaaactttcaaatagattgaaactgaaaagtaaatcagc 6628278  T
Q  117 actcaagtaagataaaaatgcttaattaaacttcgatgtgataaaa 162  Q
    ||| ||| |||| |||||||| |||  || |||| |||||||||||    
T  6628279 acttaagcaaga-aaaaatgcataa--aatcttcaatgtgataaaa 6628321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 18421734 - 18421788
Alignment:
Q  65 aatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagcact 119  Q
    |||||||| ||||||||||||| || |||||||| ||||||||||||||||||||    
T  18421734 aatgataacttaacaagctttcaaagagtaagaaactgaaaacaaaatcagcact 18421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 8109506 - 8109635
Alignment:
Q  66 atgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagcactcaagtaagataaaaatgcttaattaaacttcgatgtgataaaacaa 165  Q
    ||||||| ||||||||||||  || || ||||| |||||||| || ||| |||| ||| | || |||| ||| |||  || ||||||||||||| || ||    
T  8109506 atgataacttaacaagcttttaaataggaagaaactgaaaactaattcaacacttaagcaggacaaaa-tgcataa--aatcttcgatgtgatataaaaa 8109602  T
Q  166 tcactaactcaatatgagaatttgaagtaactg 198  Q
    |||| |||| ||||||||||||||||| |||||    
T  8109603 tcaccaacttaatatgagaatttgaaggaactg 8109635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 35362197 - 35362374
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    ||||||||| |||| | |||||||||||||| |||||||| || |||||||||||| | ||||||||||| ||| ||||||| |||||||||||||||||    
T  35362197 accaagcctaaaaaattcacacaaatcaaatcacaatatgggt-atttaatgataactaaacaagctttcaaaccgtaagaaactgaaaacaaaatcagc 35362295  T
Q  117 actcaagtaagataaaaatgcttaattaaacttcgatgtgataaaacaatcactaactcaatatgagaatttgaagtaact 197  Q
    ||| ||| | || |||||||| |||  || |||| ||||||||||| |||||| |||| ||||||| ||||||||| ||||    
T  35362296 acttaagcaggaaaaaaatgcataa--aatcttcaatgtgataaaaaaatcaccaacttaatatgataatttgaaggaact 35362374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 13641105 - 13641206
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||| |||| |||||||||| || | || |||||||| || ||||||||||||||    
T  13641105 accaagcctcaaaagttcatacaaatcaaataacaatatgag-tatttagtgatgatttaacaagtttccaaatagtaagaaactaaaaacaaaatcagc 13641203  T
Q  117 act 119  Q
    |||    
T  13641204 act 13641206  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 50689593 - 50689772
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| ||||||||||||||||||||||| || | |||||||||| | ||||||||||| |||| |||||| |||||||||||||||||    
T  50689593 accaagcctcaaaagttcacacaaatcaaataacaatatgtgt-agttaatgataactcaacaagctttcaaacaataagaaactgaaaacaaaatcagc 50689691  T
Q  117 actcaagtaagataaaaatgcttaattaaacttcgatgtgat-aaaacaatcactaactcaatatgagaatttgaagtaactg 198  Q
    |||  || | || |||||||| |||  ||  ||| ||||||| |||| |||||| |||| ||||||||||||||||| |||||    
T  50689692 acttgaggaggaaaaaaatgcataa--aattttcaatgtgataaaaaaaatcaccaacttaatatgagaatttgaaggaactg 50689772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 31763626 - 31763459
Alignment:
Q  27 aaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagcactcaagtaa 126  Q
    |||||| |||||||||||||||||||||||   |||||||||||||  |||||||||||| ||||||||||| ||||||||||||||| |||| ||| |     
T  31763626 aaaagttcacacaaatcaaataacaatatgg--tatttaatgataacataacaagctttcaaacagtaagaaactgaaaacaaaatcaacacttaagcag 31763529  T
Q  127 gataaaaatgcttaattaaacttcgatgtgat--aaaacaatcactaactcaatatgagaatttgaagtaact 197  Q
    || ||||||||  ||  || |||| |||| ||  |||| |||||| |||| ||||||||||||||||| ||||    
T  31763528 ga-aaaaatgc--aaaaaatcttcaatgtcataaaaaaaaatcaccaacttaatatgagaatttgaaggaact 31763459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 13611235 - 13611117
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| ||||||||||||||||||||||  ||  ||||||||||| ||||||||||||  |||||  |||| ||||| |||||||||||    
T  13611235 accaagcctcaaaagttcacacaaatcaaataacaatataggt--tttaatgataacttaacaagcttttaaacagacagaaactgaatacaaaatcagc 13611138  T
Q  117 actcaagtaagataaaaatgc 137  Q
    ||| ||| | || ||||||||    
T  13611137 acttaagcaggaaaaaaatgc 13611117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 27157463 - 27157286
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||| |||| ||||||  |||||||||||||| |    
T  27157463 accaagcctcaaaagttcacacaaatcaaataacaatatgggt-atttaatgataacttaacaagctttcaaacaataagaaattgaaaacaaaatcatc 27157365  T
Q  117 actcaagta-agataaaaatgcttaattaaacttcgatgtgataaaacaa-tcactaactcaatatgagaatttgaagtaact 197  Q
    ||| |  || ||| |||||||| |||  || |||| ||||||||||| || |||| |||| ||||||||||||||||| ||||    
T  27157364 actta--tacagaaaaaaatgcataa--aatcttcaatgtgataaaaaaattcaccaacttaatatgagaatttgaaggaact 27157286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 26425490 - 26425586
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatca 114  Q
    |||| ||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||  || ||||||| |||||||||||||||    
T  26425490 accacgcctcaaaagttcacacaaatcaaataacaatatgggt-atttaatgataacttaacaagctttcagacggtaagaaactgaaaacaaaatca 26425586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 3525851 - 3525757
Alignment:
Q  19 caagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatca 114  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |||  |||| ||| || |||||||||||||||    
T  3525851 caagcctcaaaagttcacacaaatcaaataacaatatgag-tatttaatgataacttaacaagtttttaaacaataaaaaactgaaaacaaaatca 3525757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 9626011 - 9626129
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| ||||||||||||||||||||||  ||  ||||||||||| ||||||||||||  |||||  |||| ||||| |||||||||||    
T  9626011 accaagcctcaaaagttcacacaaatcaaataacaatataggt--tttaatgataacttaacaagcttttaaacagacagaaactgaatacaaaatcagc 9626108  T
Q  117 actcaagtaagataaaaatgc 137  Q
    ||| ||| | || ||||||||    
T  9626109 acttaagcaggaaaaaaatgc 9626129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 21523985 - 21524022
Alignment:
Q  19 caagcctcaaaagtacacacaaatcaaataacaatatg 56  Q
    |||||||||||||| |||||||||||||||||||||||    
T  21523985 caagcctcaaaagttcacacaaatcaaataacaatatg 21524022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 3406465 - 3406397
Alignment:
Q  69 ataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagcactcaagtaagataaaaatgc 137  Q
    |||| |||| |||||||| ||||||||||| || |||||||||| |||||| ||||| || ||||||||    
T  3406465 ataacttaaaaagctttcaaacagtaagaaacttaaaacaaaattagcacttaagtaggaaaaaaatgc 3406397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 15055636 - 15055737
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    ||||||||||||||||   ||||||||||||||||||||| || | |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  15055636 accaagcctcaaaagtttgcacaaatcaaataacaatatgggt-agttaatgataacttaacaagctttcaaacagtaagaaactgaaaacaaaatcagc 15055734  T
Q  117 act 119  Q
    |||    
T  15055735 act 15055737  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 22300171 - 22300070
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||| |||| |||||||||| || | || |||||||| || ||||||||||||||    
T  22300171 accaagcctcaaaagttcatacaaatcaaataacaatatgag-tatttagtgatgatttaacaagtttccaaatagtaagaaactaaaaacaaaatcagc 22300073  T
Q  117 act 119  Q
    |||    
T  22300072 act 22300070  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 16463902 - 16463801
Alignment:
Q  17 accaagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagc 116  Q
    |||||||||||||| | |||||||||||||| |||||||||| |||| ||||||||  |||||||||||| |||| |||||| |||||||  ||||||||    
T  16463902 accaagcctcaaaatttcacacaaatcaaatgacaatatgag-tattaaatgataacataacaagctttcaaacaataagaaactgaaaattaaatcagc 16463804  T
Q  117 act 119  Q
    |||    
T  16463803 act 16463801  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 22293173 - 22293074
Alignment:
Q  19 caagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctttctaacagtaagaatctgaaaacaaaatcagcac 118  Q
    |||||||||||||| || |||||||||||||||||||||| ||||||   || |||||||||| || | || |||||||| || ||||||||||||||||    
T  22293173 caagcctcaaaagttcatacaaatcaaataacaatatgag-tatttagatatgatttaacaagtttccaaatagtaagaaactaaaaacaaaatcagcac 22293075  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 54739542 - 54739478
Alignment:
Q  20 aagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagcttt 85  Q
    |||||||||||||  |||||||||||||||||||||| |  |||||||||||| ||||||||||||    
T  54739542 aagcctcaaaagtttacacaaatcaaataacaatatg-ggcatttaatgataacttaacaagcttt 54739478  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 9798308 - 9798372
Alignment:
Q  19 caagcctcaaaagtacacacaaatcaaataacaatatgagttatttaatgataatttaacaagctt 84  Q
    ||||||| || ||| ||||||||||||||||| ||||||| | || |||||||| |||||||||||    
T  9798308 caagccttaatagttcacacaaatcaaataaccatatgag-tcttaaatgataacttaacaagctt 9798372  T

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