View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15248_low_12 (Length: 220)
Name: NF15248_low_12
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15248_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 32895446 - 32895634
Alignment:
| Q |
14 |
ataattctcacataaatagagatacataacaataacatgcagtgactcttgcagtagagtctaatttaactgaaaagagtcgagtaatttgaatccactc |
113 |
Q |
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| T |
32895446 |
ataattctcacataaatagagatacataacaataacatgcagtgactcttgcagtagagtctaatttaactgaaaagagtcgagtaatttgaattcactc |
32895545 |
T |
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| Q |
114 |
atatttacttttcagcactgcttggttaaagctatctttccaccaccataagataaacagaaaaaagcatgaatgatagctttgtttct |
202 |
Q |
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| T |
32895546 |
atatttacttttcaacactgcctggttaaagctatctttccaccaccataagataaacagaaaaaagcatgaatgatagctttgtttct |
32895634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 32892503 - 32892550
Alignment:
| Q |
139 |
ttaaagctatctttccaccaccataagataaacagaaaaaagcatgaa |
186 |
Q |
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| T |
32892503 |
ttaaagctatcttccccccaccagaagttaaacagaaaaaagcatgaa |
32892550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 16753284 - 16753349
Alignment:
| Q |
48 |
acatgcagtgactcttgcagtagagtctaatttaactgaaaagagtcgagtaatttgaatccactc |
113 |
Q |
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| T |
16753284 |
acatgcagtgactcgtgcaatagagtctgatttaatcgaaaagagtcaattaacttgaatccactc |
16753349 |
T |
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