View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15248_low_3 (Length: 537)
Name: NF15248_low_3
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15248_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 11759340 - 11759840
Alignment:
| Q |
19 |
aaatgtgaaataaaatgaagtgtgtgggttaaattcacattatagtacatggaatatgtgcacttttctttttactcgtgcatgcggttagttacttcag |
118 |
Q |
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| T |
11759340 |
aaatgtgaaataaaatgaagtgtgtgggttaaattcacattttagtacatggaatatgtgcacttttctttttactcgtgcatgcggttagttacttcag |
11759439 |
T |
|
| Q |
119 |
gttgtccaacgagagattttaccttttacttgcaagttgtaaatgtagggtaaatttctttttaaaaattgtaccagctttaaataaaatatctataaga |
218 |
Q |
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| T |
11759440 |
gttttccaacgagagattttaccttttacttgcaagttgtaaatgtagtgtaaatttctttttaaaaattgtaccagctttaaataaaatatctataaga |
11759539 |
T |
|
| Q |
219 |
ttatagaaattattatagtattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaatttaatt |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759540 |
ttatagaaattattataatattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaatttaatt |
11759639 |
T |
|
| Q |
319 |
tgtatatagcgatactgttaaacttttttacacgcccataaaaataaattttgaaatttaatttggttgttttattgttacattacatgattgtcttctt |
418 |
Q |
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|||||||| ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759640 |
tgtatataacgatactgtaaaacttttttacacgcgcataaaaataaattttaaaatttaatttggttgttttattgttacattacatgattgtcttctt |
11759739 |
T |
|
| Q |
419 |
ctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataatcctcatc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759740 |
ctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataatcctcatc |
11759839 |
T |
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| Q |
519 |
t |
519 |
Q |
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| T |
11759840 |
t |
11759840 |
T |
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