View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15248_low_5 (Length: 427)
Name: NF15248_low_5
Description: NF15248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15248_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 37497470 - 37497867
Alignment:
| Q |
1 |
gaaagtgtactcttggttatatacactggctcagtctgnnnnnnncttggtctttgagtatgttagatccactgaaagaggcaagtatctgcattctaca |
100 |
Q |
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| T |
37497470 |
gaaagtgtactcttggttatatacactggctcagtctgaaaaaaacttggtctttgagtatgttagatccactgaaagaggcaattatctgcattctaca |
37497569 |
T |
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| Q |
101 |
atactactttatcaatgaactttgattttataattatcattctttaatttttacaccctctccctacacccaataaaaataactccnnnnnnncaattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||| |
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| T |
37497570 |
atactactttatcaatgaactttgattttataattatcattctttaatttttacaccc-------------aataaagataacttctttttttcaattgt |
37497656 |
T |
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| Q |
201 |
atactgaaattaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgcctcttgcgctatgcaaactgtaactactgtgcaaatttttcataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497657 |
atactgaaattaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgccgcttgcgctatgcaaactgtaactactgtgcaaatttttcataa |
37497756 |
T |
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| Q |
301 |
aagaaatttggagggagaaaattgatactagggctcaactaagattttcattgtggtttctgttgcgatcattgatattgtagagaattgctgtcaaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497757 |
aagaaatttggagggagaaaattgatactagggctcaactaagattttcattgtggtttctgttgcgatcattgatattgtagagaattgctgtcaaatg |
37497856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 32618778 - 32618728
Alignment:
| Q |
362 |
gttgcgatcattgatattgtagagaattgctgtcaaatgtggctgataagt |
412 |
Q |
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|||||||| |||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
32618778 |
gttgcgatatttgatattgtagagtattgcagtcaaatgcggctgataagt |
32618728 |
T |
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