View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15249_high_2 (Length: 381)
Name: NF15249_high_2
Description: NF15249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15249_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 47080474 - 47080829
Alignment:
| Q |
8 |
agtgagatgaattactagtaaaatttgaatgaaacagaaaagattgaaagatcagaaacaataaatgagagagtggagcaggcatttggaaaactatgtt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47080474 |
agtgaaatgaattactagtaaaatttgaatgaaacagaaaagattgaaagatcagaaacaataaatgagagagtggagcaggcatttggaaaactatgtt |
47080573 |
T |
|
| Q |
108 |
tgttaggattcaccggcaggacctgagggagcacacagaatgtgtccggagtgcccctgttgtgtcacagactcaaccttcaattaatgtatacttacag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47080574 |
tgttaggattcaccggcaggacctgagggagcacacagaatgtgtccggagtgcccctgttgtgtcacagactcaaccttcaattaatgtatacttacag |
47080673 |
T |
|
| Q |
208 |
tacatgttagaaagggtattattgggaattgtactcattattgataccttcattccctatcacaattggtctatttcaatctttaatgcttccttaaatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47080674 |
tacatgttagaaagggtattattgggaattgtactcattattgatacattcattccctatcacaattggtctatttcaatctttaatgcttccttaaatt |
47080773 |
T |
|
| Q |
308 |
atgctattgtagctgtagcttcagagcaacaacacaacccatgattctaacttttt |
363 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47080774 |
atgctattgtagctgtaacttcagagaaacaacacaacccatgattctaacttttt |
47080829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University