View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15249_low_3 (Length: 290)
Name: NF15249_low_3
Description: NF15249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15249_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 46 - 272
Target Start/End: Complemental strand, 47875631 - 47875401
Alignment:
| Q |
46 |
tcaatcggctatcatgaattacattatatattactatccaattaacgagtagtgtat----atatcaataagaaaatgaaactgtattcatctagcctcc |
141 |
Q |
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| T |
47875631 |
tcaatcggctatcatgaattacattatatattactatccaattaatgagtagtgtatgcaaaaatca-taagaaaatgaaactgtattcatctagcctct |
47875533 |
T |
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| Q |
142 |
ctagctagc----tagcaatagttgcagaagattgggtgaacgtatagttattattatttgcatagaagtgaatttgttgggcctttgggcagagaatca |
237 |
Q |
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| T |
47875532 |
ctagctagctagctagcaatagttgcagaagattgggtgaacgtatagttattattatttgcatagaagtgaat---ttgggcctttgggcatagaatca |
47875436 |
T |
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| Q |
238 |
aagctgtggtgtgagaggagccattctcatcgctg |
272 |
Q |
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| T |
47875435 |
aagccgtggtgtgagaggagccattctcatcgctg |
47875401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 47875684 - 47875644
Alignment:
| Q |
11 |
cacagaagcagcacgtacgtgatgagaaaacttgatcaatc |
51 |
Q |
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| T |
47875684 |
cacataagcagcacgtacgtgatgagaaaacttgatcaatc |
47875644 |
T |
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