View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1524R-Insertion-1 (Length: 1101)

Name: NF1524R-Insertion-1
Description: NF1524R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1524R-Insertion-1
NF1524R-Insertion-1
[»] chr4 (7 HSPs)
chr4 (8-975)||(31733092-31734059)
chr4 (230-975)||(31745993-31746738)
chr4 (220-950)||(31740674-31741403)
chr4 (690-790)||(31725123-31725223)
chr4 (687-790)||(31717898-31718001)
chr4 (676-790)||(31702568-31702682)
chr4 (674-784)||(31697460-31697570)
[»] chr8 (8 HSPs)
chr8 (676-790)||(23560246-23560360)
chr8 (720-784)||(15703515-15703579)
chr8 (720-788)||(15805179-15805247)
chr8 (720-784)||(15697126-15697190)
chr8 (720-784)||(15711797-15711861)
chr8 (720-784)||(15722347-15722411)
chr8 (720-787)||(15813020-15813087)
chr8 (726-787)||(15764204-15764265)
[»] chr3 (4 HSPs)
chr3 (720-789)||(3123009-3123078)
chr3 (720-789)||(3103478-3103547)
chr3 (723-790)||(20341908-20341975)
chr3 (717-790)||(5855841-5855914)
[»] chr1 (1 HSPs)
chr1 (717-791)||(21936639-21936713)


Alignment Details
Target: chr4 (Bit Score: 849; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 8 - 975
Target Start/End: Complemental strand, 31734059 - 31733092
Alignment:
Q  8 actgtttgagttagtaagttttgtaagctcaaatcataatctacttgagagaatcctacctcatttatagcataactgataccttttctggtatgtgtgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734059 actgtttgagttagtaagttttgtaagctcaaatcataatctacttgagagaatcctacctcatttatagcataactgataccttttctggtatgtgtgt 31733960  T
Q  108 atcatttcatatattactaaaaaatacaaaacaatacttcaaaaataactagactataagttcaccttacgatatagactttaacatgcatccatatata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31733959 atcatttcatatattactaaaaaatacaaaacaatacttcaaaaataactagactataagttcaccttacgatatagactttaacgtgcatccatatata 31733860  T
Q  208 attagttgaatatgtctcgaggaaaatagtttcatcgagcatctaataaggaaatggtcacttcatttactgaactacaacaacccttaggatttgtgat 307  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31733859 attagtggaatatgtctcgaggaaaatagtttcatcgagcatctaataaggaaatggtcacttcatttactgaactacaacaaccctttggatttgtgat 31733760  T
Q  308 tgaatttgtttcagatggaacatttttggaaatgaaaccaggttctttaggttctcctaattccttctcagaactccccaacattagaattacagaagcc 407  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31733759 tgaatttgtttcagatgaaacatttttggaaatgaaaccaggttctttaggttctcctaattccttctcagaactccccaacattagaattacagaagcc 31733660  T
Q  408 atggtcggcctatcttcaggattctgctgtacacacaggagactaatgtgcatacaacgcaatacttctgatacaacatacgtctcatcaatttttgagt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31733659 atggtcggcctatcttcaggattctgctgtacacacaggagactaatgtgcatacaacgcaatacttctgatacaacatacgtctcatcaatgtttgagt 31733560  T
Q  508 cggtcaaccctaaagccctgtcctctttccacgctgcccatgcctaaatcatataagaggttgatgtattatttgtaagattagaaattgacataaatac 607  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31733559 cggtcaaacctaaagccctgtcctctttccacgctgcccatgcctaaatcatataagaggttgatatattatttgtaagattagaaattgacataaatac 31733460  T
Q  608 ataacttgccatttgccaagtacttacttggccaacaaggttaagagtaccatctgtgtgataatatgctctatttcttttgccacatataatctccaat 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31733459 ataacttgccatttgccaagtacttacttggccaacaaggttaagagtaccatctgtgtgataatatgctctatttcttttgccacatataatctccaat 31733360  T
Q  708 aataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcatatgaattcattacagc 807  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  31733359 aataaaatgccgaagctaaaaacgtcagatttcaccgaaaataatccatcaacagcatattctggtgccatgtacccactgcatatgaatccattacagc 31733260  T
Q  808 acattagaatattcacatccatgtaagttaatatacggtattggacatttgttagatactcactaagtttccaattatttctcttttgtgttcccttcga 907  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||    
T  31733259 acattataatattcacatccatgtaagttaatatacggtattggacatttgttagatactcactaag-ttccaatta-ttctc-tttgtgtttccttcga 31733163  T
Q  908 attggtct-ctcggaaagttctagctgttc--aaatctgatattttttggattc-aattatcgtcgagtaaa 975  Q
    |||||||| |||  ||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||    
T  31733162 attggtctcctccaaaagttctagctgttccaaaatctgata-tttttggattcaaattatcgtcgagtaaa 31733092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 230 - 975
Target Start/End: Complemental strand, 31746738 - 31745993
Alignment:
Q  230 aaaatagtttcatcgagcatctaataaggaaatggtcacttcatttactgaactacaacaacccttaggatttgtgatt-gaatttgtttcagatggaac 328  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |||| |||||||    ||||  ||||||| | | |  ||||||| ||    ||     
T  31746738 aaaatagattcatcgagcatgtaataaggaaatggtcacttcattgactgtactacaat---ccttctgatttgtcaatagcttttgttt-agtcaaaaa 31746643  T
Q  329 atttttggaaatgaaaccaggttctttaggttctcctaattccttctcagaact---ccccaacattagaattacagaagccatggtcggcctatcttca 425  Q
     ||||||||||||||||||||||||| ||| || | || |||| |||||| |||   ||||||||||||||| ||||| | |||||| ||||||||||||    
T  31746642 ctttttggaaatgaaaccaggttcttcaggctcccttagttccatctcagtactactccccaacattagaatcacagacgacatggtaggcctatcttca 31746543  T
Q  426 ggattctgctgtacacacaggagactaatgtgcatacaacgcaatacttctgatacaacatacgtctcatcaatttttgagtcggtcaaccctaaagccc 525  Q
    |||||||||||| |||||| ||||||||  |||||||||||||| |||||||||||||| ||||||||| | |  ||||||||| ||||| |||||||||    
T  31746542 ggattctgctgtgcacacaagagactaacatgcatacaacgcaacacttctgatacaacgtacgtctcacctaagtttgagtcgatcaactctaaagccc 31746443  T
Q  526 tgtcctctttccacgctgcccatgcctaaatcatataagaggttgatgtattatttgtaagattagaaat-------tgacataaatacataacttgcca 618  Q
    | || |||||||||  ||||||||||| |||||||  ||| |||||| |||||||||| |  || |||||       ||||||  |||||| ||||||||    
T  31746442 tctcttctttccacaatgcccatgcctgaatcatacgagaagttgatatattatttgttatgtttgaaatagttaattgacatttatacatgacttgcca 31746343  T
Q  619 tttgccaagtacttacttggccaacaaggttaagagtaccatctgtgtgataatatgctctatttcttttgccacatataatctccaataataaaatgcc 718  Q
            ||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  31746342 g-------gtacttacttggcgaacaaggttaagagtctcatctgtgtgataatatgctctatttcttttgccacagataatctccaataataaaattcc 31746250  T
Q  719 gaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcatatgaattcattacagcacattagaata 818  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||| || |||||||||    
T  31746249 gaagctataaacgtcagacttcactgaaaacaatccatcaacagcatactctggtgccatgtacccactgcatatgaaaccattacaacaaattagaata 31746150  T
Q  819 ttcacatccatgtaagttaatatacggtattggacatttgttagatactcactaagtttccaattatttctcttttgtgttcccttcgaattggtct-ct 917  Q
    ||||||||||||||| |||||||| |||  |||| |||| ||||  |||||||||| | ||||||| |||| || ||| || |||| || ||||||| ||    
T  31746149 ttcacatccatgtaaattaatatatggtgctggaaatttattaggaactcactaag-tcccaatta-ttct-ttctgtttttcctttgatttggtctcct 31746053  T
Q  918 cggaaagttctagctgttc--aaatctgatattttttggattc-aattatcgtcgagtaaa 975  Q
    |  ||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||    
T  31746052 ccaaaagttctagctgttccaaaatctgata-tttttggattcaaattatcgtcgagtaaa 31745993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 220 - 950
Target Start/End: Complemental strand, 31741403 - 31740674
Alignment:
Q  220 tgtctcgaggaaaatagtttcatcgagcatctaataaggaaatggtcacttcatttactgaactacaacaacccttaggatttgtgattgaatttgtttc 319  Q
    |||||| | ||||| |||||||||||||||||||||||||||| |||| || |||   |||||| |||    ||||  |||||||  || |||||| |||    
T  31741403 tgtctcaacgaaaaaagtttcatcgagcatctaataaggaaatagtcatttgattggatgaactgcaat---ccttctgatttgtctttaaatttgattc 31741307  T
Q  320 agatggaacatttttggaaatgaaaccaggttctttaggttctcctaattccttctcagaactccccaacattagaattacagaagccatggtcggccta 419  Q
     | || |||||||   ||||| || |||||||||||||| |||||||||||| |||||| |||||| ||||| ||||| | ||  ||||| || ||||||    
T  31741306 ggttgaaacatttccagaaataaagccaggttctttaggctctcctaattccatctcagtactccctaacataagaatcagagtggccatagtaggccta 31741207  T
Q  420 tcttcaggattctgctgtacacacaggagactaatgtgcatacaacgcaatacttctgatacaacatacgtctcatcaatttttgagtcggtcaacccta 519  Q
    |||||||||||||| |||||||||| |||||| | ||||||||||||||| |||||||||| ||    ||||||| | || ||||||||  ||||  | |    
T  31741206 tcttcaggattctgttgtacacacaagagactgacgtgcatacaacgcaacacttctgatataatgagcgtctcacctatgtttgagtcaatcaaatcca 31741107  T
Q  520 aagccctgtcctctttccacgctgcccatgcctaaatcatataagaggttgatgtat--tatttgtaagattagaaattgacataaat-acataa---ct 613  Q
    ||||  |||||||||||||| || ||||||||| ||| || ||||| || ||| |||  ||||||| |  || |||||||   ||| | |||||    ||    
T  31741106 aagctttgtcctctttccacactacccatgcctgaataatgtaagaagtcgatatatattatttgttatgtttgaaattgt--taattgacatatattct 31741009  T
Q  614 tgccatttgccaagtacttacttggccaacaaggttaagagtaccatctgtgtgataatatgctctatttcttttgccacatataatctccaataataaa 713  Q
    || | ||| |||||||||||||| ||||||||| ||||||||  ||| ||| |||||||||||||||||||||||||||| |||||| || || ||||||    
T  31741008 tgactttt-ccaagtacttactttgccaacaagattaagagtctcatatgtatgataatatgctctatttcttttgccacgtataatttctaacaataaa 31740910  T
Q  714 atgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcatatgaattcattacagcacatta 813  Q
    || || ||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||  |||| || || ||||    
T  31740909 attccaaagctaaaaacatcagatttcaccgaaaacaattcatcaacagcatactcgggtgccatgtatccactgcatatgaa-gcattgcaacaaatta 31740811  T
Q  814 gaatattcacatccatgtaagttaatatacggtattggacatttgttagatactcactaagtttccaattatttctcttttgtgttcccttcgaattggt 913  Q
    | ||||||||||| | |||| ||||||||   |  ||| || || |||||  ||||||||| | ||||||| ||||| ||  |||| ||||||| |||||    
T  31740810 gcatattcacatctaagtaaattaatatataatgctgggcagttattagaagctcactaag-tcccaatta-ttctc-ttcctgtttccttcgatttggt 31740714  T
Q  914 ct-ctcggaaagttctagctgttc--aaatctgatatttt 950  Q
    || ||| |||||||||||||||||  ||||||||||||||    
T  31740713 ctcctccgaaagttctagctgttccaaaatctgatatttt 31740674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 690 - 790
Target Start/End: Complemental strand, 31725223 - 31725123
Alignment:
Q  690 ccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgc 789  Q
    |||||||||||||| || |||||||| || ||||| ||||| || |||||||| |||||   |||||||| |||||| |||||||||||||| |||||||    
T  31725223 ccacatataatctctaacaataaaataccaaagctgaaaacgtcggatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccactgc 31725124  T
Q  790 a 790  Q
    |    
T  31725123 a 31725123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 687 - 790
Target Start/End: Complemental strand, 31718001 - 31717898
Alignment:
Q  687 ttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccac 786  Q
    ||||||||||||||||| || | |||||| || ||||| ||||| || |||||||| |||||   |||||||| |||||| |||||||||||||| ||||    
T  31718001 ttgccacatataatctctaacagtaaaataccaaagctgaaaacgtcggatttcacggaaaattgtccatcaatagcatactctggtgccatgtacccac 31717902  T
Q  787 tgca 790  Q
    ||||    
T  31717901 tgca 31717898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 676 - 790
Target Start/End: Complemental strand, 31702682 - 31702568
Alignment:
Q  676 ctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgc 775  Q
    |||||||| | || |||| ||||||||| || | |||||| || ||||| |||||||| |||||||| |||||   |||||||| |||||| ||||||||    
T  31702682 ctctatttttcttcccacttataatctctaacagtaaaataccaaagctgaaaacatccgatttcacggaaaattgtccatcaatagcatactctggtgc 31702583  T
Q  776 catgtatccactgca 790  Q
    |||||| ||||||||    
T  31702582 catgtacccactgca 31702568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 674 - 784
Target Start/End: Complemental strand, 31697570 - 31697460
Alignment:
Q  674 tgctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggt 773  Q
    |||||||||| | || || |||||||||||||||| |||||  || ||||| ||||| || ||||| | ||||||    |||||||||||||| |||||     
T  31697570 tgctctatttttgttcccgcatataatctccaatagtaaaacaccaaagctgaaaacgtctgatttgattgaaaattgcccatcaacagcatactctgga 31697471  T
Q  774 gccatgtatcc 784  Q
    |||||||||||    
T  31697470 gccatgtatcc 31697460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 676 - 790
Target Start/End: Original strand, 23560246 - 23560360
Alignment:
Q  676 ctctatttcttttgccacatataatctccaataataaaatgccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgc 775  Q
    ||||| ||||||| ||||||||||||||||  |  ||||| || || || || |||||||||||||| ||||| | ||||||  ||||||||||||||||    
T  23560246 ctctacttctttttccacatataatctccagcatcaaaattccaaaactgaatacatcagatttcacagaaaaaagtccatccgcagcatattctggtgc 23560345  T
Q  776 catgtatccactgca 790  Q
    |||||| ||||||||    
T  23560346 catgtagccactgca 23560360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 720 - 784
Target Start/End: Original strand, 15703515 - 15703579
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 784  Q
    ||||||||||||||||||||||||||||| |||||| | | |||||||||||| |||||||||||    
T  15703515 aagctaaaaacatcagatttcactgaaaataatccagccatagcatattctggagccatgtatcc 15703579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 720 - 788
Target Start/End: Original strand, 15805179 - 15805247
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactg 788  Q
    |||||||||||||| |||||||||||||| || ||| | | |||||||||||| |||||||||||||||    
T  15805179 aagctaaaaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccactg 15805247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 784
Target Start/End: Original strand, 15697126 - 15697190
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 784  Q
    ||||| |||||||| |||||||||||||| |||||| | | |||||||||||| |||||||||||    
T  15697126 aagctgaaaacatcggatttcactgaaaataatccagccatagcatattctggagccatgtatcc 15697190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 784
Target Start/End: Original strand, 15711797 - 15711861
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 784  Q
    |||||||| |||||||| ||||||||||| || ||| | | |||||||||||| |||||||||||    
T  15711797 aagctaaatacatcagacttcactgaaaataacccagccatagcatattctggagccatgtatcc 15711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 784
Target Start/End: Original strand, 15722347 - 15722411
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatcc 784  Q
    |||||| ||||||| ||||| |||||||||| |||| | | |||||||||||| |||||||||||    
T  15722347 aagctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatcc 15722411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 720 - 787
Target Start/End: Original strand, 15813020 - 15813087
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccact 787  Q
    ||||| |||||||| |||||||||||||| || ||| | | ||| |||||||| ||||||||||||||    
T  15813020 aagctgaaaacatcggatttcactgaaaataacccagccatagcgtattctggagccatgtatccact 15813087  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 726 - 787
Target Start/End: Original strand, 15764204 - 15764265
Alignment:
Q  726 aaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccact 787  Q
    |||||||| |||||||| ||||| || ||| | | |||||||||||| ||||||||||||||    
T  15764204 aaaacatcggatttcaccgaaaataacccagccatagcatattctggagccatgtatccact 15764265  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 720 - 789
Target Start/End: Complemental strand, 3123078 - 3123009
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgc 789  Q
    ||||| |||||||| || |||||||||||||| || || | |||||||||||| ||||||||||||||||    
T  3123078 aagctgaaaacatctgacttcactgaaaacaagccttcgatagcatattctggagccatgtatccactgc 3123009  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 720 - 789
Target Start/End: Complemental strand, 3103547 - 3103478
Alignment:
Q  720 aagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgc 789  Q
    ||||| |||||||| || || |||||||||||||| || | |||||||||||| ||||| ||||||||||    
T  3103547 aagctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccactgc 3103478  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 723 - 790
Target Start/End: Original strand, 20341908 - 20341975
Alignment:
Q  723 ctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgca 790  Q
    ||||||||||||||||| | ||| ||  ||||||  |||||||||||||| | |||||||||||||||    
T  20341908 ctaaaaacatcagattttattgagaatgatccatgcacagcatattctggaggcatgtatccactgca 20341975  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 717 - 790
Target Start/End: Complemental strand, 5855914 - 5855841
Alignment:
Q  717 ccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgca 790  Q
    ||||||||||||||||||||||| | ||| ||  ||||||  || ||||||||||| | ||| |||||||||||    
T  5855914 ccgaagctaaaaacatcagattttattgagaaagatccatgcactgcatattctggaggcatatatccactgca 5855841  T

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Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 717 - 791
Target Start/End: Complemental strand, 21936713 - 21936639
Alignment:
Q  717 ccgaagctaaaaacatcagatttcactgaaaacaatccatcaacagcatattctggtgccatgtatccactgcat 791  Q
    ||||||||||||||||| || |||||||||||   ||||||||  ||||| ||||| | |||||| |||||||||    
T  21936713 ccgaagctaaaaacatcggacttcactgaaaaatgtccatcaagggcatactctggagacatgtaaccactgcat 21936639  T

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