View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1524R-Insertion-10 (Length: 191)
Name: NF1524R-Insertion-10
Description: NF1524R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524R-Insertion-10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 14597492 - 14597310
Alignment:
| Q |
9 |
gatttgaccctccctcaggtgattgggacacaaaagatcctaaacatgaatgtacggatgaagtctgtgaaactacaccggccttgaatgccagtgagtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597492 |
gatttgaccctccctcaggtgattgggacacaaaagatcctaaacatgaatgtacggatgaagtctgtgaaactacaccggccttgaatgccagtgagtt |
14597393 |
T |
|
| Q |
109 |
tgatcaagatttagattcaaacttgttgcccaagcgattcggtaattcatccatgttggctgatagcataccagtcgctgagt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597392 |
tgatcaagatttagattcaaacttgttgcccaagcgatttggtaattcatccatgttggctgatagcataccagtcgctgagt |
14597310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University